JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRI1_chr19_10548085_10571010	0/0	c0005	2112	19	6	5	3	2	3	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0006	2112	18	0	0	17	0	1	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	1/0	c0007	2112	11	0	5	0	1	4	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0008	2112	8	0	0	8	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0009	2112	8	0	0	8	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0010	2112	7	6	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0011	2112	7	6	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0012	2112	6	0	0	6	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0013	2100	5	5	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0014	2112	3	2	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0015	2112	3	0	2	0	1	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0016	2112	2	2	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0017	2112	2	2	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0018	2112	2	1	0	1	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0019	2112	2	2	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0020	2112	2	0	0	2	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0021	2112	1	0	0	0	0	1	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0022	2112	1	0	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0023	2112	1	0	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0024	2112	1	0	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0025	2112	1	1	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0026	2112	1	0	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0027	2112	1	0	0	1	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0028	2112	1	1	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0029	2112	1	0	0	0	1	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0030	2112	1	1	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0031	2112	1	0	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0032	2112	1	0	0	0	0	1	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0033	2112	1	0	0	1	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0034	2112	1	0	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0035	2112	1	1	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0036	2112	1	0	0	0	0	1	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0037	2112	1	1	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0038	2112	1	1	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0039	2112	1	0	0	1	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRIT1_chr7_92194413_92250914	1/1	c0001	2211	273	70	53	114	8	26	copy fasta	KRIT1	chr7	92194413	92250914
KRIT1_chr7_92194413_92250914	0/0	c0002	2211	86	13	11	56	0	6	copy fasta	KRIT1	chr7	92194413	92250914
KRIT1_chr7_92194413_92250914	0/0	c0003	2211	1	1	0	0	0	0	copy fasta	KRIT1	chr7	92194413	92250914
KRR1_chr12_75485863_75516609	1/1	c0001	1146	248	60	48	103	11	24	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	c0002	1146	80	21	14	28	3	14	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	c0003	1146	35	3	2	30	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	c0004	1146	2	2	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	c0005	1146	2	0	0	2	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	c0006	1146	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRT10_chr17_40813117_40827614	0/0	c0001	1743	94	2	19	63	3	7	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/1	c0002	1755	76	11	10	52	1	1	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0003	1785	76	18	2	43	2	11	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0004	1755	32	6	13	1	5	7	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0005	1800	32	0	2	26	0	4	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0006	1782	26	5	15	6	0	0	copy fasta	KRT10	chr17	40813117	40827614