JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT10_chr17_40813117_40827614	0/0	c0007	1755	25	8	10	1	1	5	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0008	1845	9	7	0	0	1	1	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0009	1815	9	3	3	0	0	3	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0010	1755	8	8	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0011	1770	7	0	0	7	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0012	1800	5	5	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0013	1755	3	2	1	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0014	1758	3	3	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0015	1755	2	0	1	0	1	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0016	1755	2	2	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0017	1770	2	1	0	0	0	1	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0018	1731	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0019	1755	1	0	0	0	0	1	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0020	1743	1	0	0	1	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0021	1755	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0022	1770	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0023	1774	1	0	0	1	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0024	1767	1	0	0	0	0	1	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0025	1785	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0026	1758	1	0	0	1	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0027	1785	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0028	1809	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0029	1785	1	0	0	0	0	1	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0030	1731	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	c0031	1830	1	0	0	0	0	1	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	1/0	c0032	1755	1	0	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT12_chr17_40856303_40872223	0/0	c0001	1485	219	75	34	65	9	36	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/1	c0002	1485	175	13	31	115	6	9	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	c0003	1485	19	2	15	1	1	0	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	c0004	1485	5	0	0	5	0	0	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	c0005	1485	1	0	0	0	0	1	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	c0006	1485	1	0	0	1	0	0	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	c0007	1485	1	1	0	0	0	0	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	c0008	1485	1	1	0	0	0	0	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	c0009	1485	1	0	1	0	0	0	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	c0010	1485	1	0	1	0	0	0	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	c0011	1485	1	0	0	1	0	0	copy fasta	KRT12	chr17	40856303	40872223
KRT13_chr17_41495981_41510612	0/1	c0001	1377	324	17	70	179	14	43	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0002	1377	53	23	6	22	0	2	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0003	1377	27	15	6	4	2	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	1/0	c0004	1377	21	20	0	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0005	1377	10	9	1	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0006	1377	8	8	0	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0007	1377	4	1	1	0	0	2	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0008	1377	4	0	0	4	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0009	1377	3	0	0	3	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0010	1377	2	2	0	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0011	1377	2	2	0	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0012	1377	2	0	0	2	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0013	1407	1	0	0	0	0	1	copy fasta	KRT13	chr17	41495981	41510612