JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT13_chr17_41495981_41510612	0/0	c0014	1377	1	0	1	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0015	1377	1	0	0	1	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0016	1377	1	0	0	1	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0017	1377	1	0	1	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0018	1377	1	0	1	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0019	1377	1	0	0	1	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0020	1377	1	1	0	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0021	1377	1	0	0	1	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	c0022	1377	1	0	1	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT14_chr17_41577279_41591895	0/1	c0001	1419	194	37	39	84	11	22	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0002	1419	30	7	6	9	2	6	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0003	1419	27	7	11	0	3	6	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0004	1419	20	0	9	11	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0005	1419	11	10	1	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0006	1419	8	5	3	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0007	1419	7	7	0	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0008	1419	4	4	0	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0009	1419	3	3	0	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0010	1419	3	3	0	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0011	1419	3	3	0	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	1/0	c0012	1419	3	2	0	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0013	1419	2	2	0	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0014	1419	2	2	0	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0015	1419	2	0	1	0	0	1	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0016	1419	1	1	0	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0017	1419	1	1	0	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0018	1419	1	0	1	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0019	1449	1	0	1	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0020	1419	1	0	0	1	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0021	1419	1	0	0	0	0	1	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0022	1419	1	0	0	1	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0023	1419	1	0	0	1	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0024	1419	1	0	0	1	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0025	1419	1	0	1	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	c0026	1419	1	0	1	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT15_chr17_41508745_41523890	0/1	c0001	1371	273	38	59	133	14	28	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0002	1371	38	14	10	5	1	8	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0003	1371	34	12	9	10	1	2	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0004	1371	11	11	0	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	1/0	c0005	1371	10	9	0	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0006	1371	8	5	3	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0007	1371	4	4	0	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0008	1371	4	0	0	4	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0009	1371	3	0	0	3	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0010	1371	2	0	0	0	0	2	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0011	1371	2	2	0	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0012	1371	1	0	0	0	0	1	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0013	1371	1	1	0	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0014	1371	1	1	0	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0015	1371	1	1	0	0	0	0	copy fasta	KRT15	chr17	41508745	41523890