JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT15_chr17_41508745_41523890	0/0	c0016	1371	1	0	1	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0017	1371	1	0	0	0	0	1	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0018	1371	1	0	0	1	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0019	1371	1	0	0	1	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	c0020	1371	1	0	0	1	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT16_chr17_41604778_41617767	0/1	c0001	1422	314	65	64	147	10	27	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	1/0	c0002	1422	43	8	18	0	4	12	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0003	1422	11	0	0	11	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0004	1422	9	9	0	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0005	1422	5	5	0	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0006	1422	4	4	0	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0007	1422	2	0	0	0	0	2	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0008	1422	2	0	0	2	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0009	1422	1	1	0	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0010	1422	1	0	1	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0011	1422	1	0	0	1	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0012	1422	1	0	0	0	0	1	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0013	1422	1	0	1	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0014	1422	1	0	1	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0015	1422	1	0	0	1	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	c0016	1422	1	0	1	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT17_chr17_41614442_41629575	1/1	c0001	1299	356	65	78	150	18	43	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0002	1299	15	14	1	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0003	1299	5	5	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0004	1299	3	3	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0005	1299	3	0	0	3	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0006	1299	3	1	2	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0007	1299	3	0	0	3	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0008	1299	2	2	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0009	1299	2	2	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0010	1299	1	1	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0011	1299	1	1	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0012	1299	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0013	1299	1	0	1	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0014	1299	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0015	1299	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0016	1299	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0017	1299	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0018	1299	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0019	1299	1	0	0	0	0	1	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0020	1299	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	c0021	1299	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT18_chr12_52944118_52957906	0/0	c0001	1293	403	94	74	177	18	40	copy fasta	KRT18	chr12	52944118	52957906
KRT18_chr12_52944118_52957906	0/0	c0002	1269	1	1	0	0	0	0	copy fasta	KRT18	chr12	52944118	52957906
KRT18_chr12_52944118_52957906	0/0	c0003	1293	1	1	0	0	0	0	copy fasta	KRT18	chr12	52944118	52957906
KRT18_chr12_52944118_52957906	0/0	c0004	1293	1	0	0	1	0	0	copy fasta	KRT18	chr12	52944118	52957906
KRT19_chr17_41518617_41533308	0/1	c0001	1203	257	39	58	123	16	20	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	1/0	c0002	1203	78	35	18	14	2	8	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	c0003	1203	19	19	0	0	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	c0004	1203	4	4	0	0	0	0	copy fasta	KRT19	chr17	41518617	41533308