JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT19_chr17_41518617_41533308	0/0	c0005	1203	1	0	0	0	0	1	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	c0006	1203	1	0	1	0	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	c0007	1203	1	0	1	0	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	c0008	1203	1	0	0	0	0	1	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	c0009	1203	1	0	0	1	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	c0010	1203	1	1	0	0	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	c0011	1203	1	0	0	1	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	c0012	1203	1	0	0	1	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	c0013	1203	1	0	0	1	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	c0014	1203	1	0	0	1	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT1_chr12_52669736_52685407	0/1	c0001	1914	126	37	25	39	4	20	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0002	1935	122	2	17	85	6	12	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	1/0	c0003	1935	95	22	20	38	3	11	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0004	1935	24	22	1	1	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0005	1935	5	0	1	1	1	2	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0006	1935	3	0	2	0	0	1	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0007	1914	2	2	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0008	1914	2	0	2	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0009	1914	2	0	2	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0010	1935	2	2	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0011	1935	2	0	2	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0012	1935	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0013	1920	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0014	1920	1	0	0	1	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0015	1935	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0016	1935	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0017	1935	1	0	0	1	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0018	1935	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0019	1935	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0020	1887	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0021	1914	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0022	1935	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0023	1935	1	0	0	1	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	c0024	1914	1	0	0	1	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT20_chr17_40870889_40890242	0/1	c0001	1275	396	70	64	205	13	43	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	c0002	1275	24	6	9	5	1	3	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	c0003	1275	17	16	1	0	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	c0004	1275	6	0	6	0	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	c0005	1275	2	2	0	0	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	c0006	1275	1	0	1	0	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	c0007	1275	1	1	0	0	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	c0008	1275	1	0	0	1	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	c0009	1275	1	0	0	1	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	c0010	1275	1	0	1	0	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	c0011	1275	1	1	0	0	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT222_chr17_40649665_40670177	1/1	c0001	888	412	84	66	204	14	42	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	c0002	888	2	2	0	0	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	c0003	888	1	0	0	1	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	c0004	888	1	0	0	1	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	c0005	888	1	1	0	0	0	0	copy fasta	KRT222	chr17	40649665	40670177