JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT222_chr17_40649665_40670177	0/0	c0006	888	1	1	0	0	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT23_chr17_40917700_40942646	0/1	c0001	1269	226	53	37	113	4	18	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0002	1269	122	28	31	42	7	14	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0003	1269	42	1	13	22	1	5	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0004	1269	16	0	0	14	1	1	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0005	1269	12	6	2	0	1	3	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0006	1269	4	4	0	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0007	1269	3	2	0	0	0	1	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0008	1269	2	0	0	2	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0009	1269	2	0	0	1	0	1	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0010	1269	2	2	0	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0011	1269	1	1	0	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0012	1269	1	0	1	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0013	1269	1	1	0	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0014	1269	1	0	0	0	0	1	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0015	1269	1	0	0	1	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	c0016	1269	1	0	0	1	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT24_chr17_40692991_40708752	0/1	c0001	1577	198	14	36	121	8	18	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	1/0	c0002	1578	169	29	22	89	8	20	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0003	1578	15	15	0	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0004	1578	8	7	1	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0005	1578	8	7	1	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0006	1578	5	5	0	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0007	1578	5	3	2	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0008	1578	3	3	0	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0009	1578	2	2	0	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0010	1578	2	1	1	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0011	1578	2	2	0	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0012	1577	2	2	0	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0013	1577	1	0	0	1	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0014	1577	1	0	0	1	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0015	1577	1	0	0	1	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0016	1577	1	0	1	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	c0017	1578	1	0	0	1	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT25_chr17_40743021_40760331	1/0	c0001	1353	185	64	34	44	11	31	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/1	c0002	1353	124	4	23	84	5	7	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	c0003	1353	71	11	14	41	0	5	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	c0004	1353	24	0	0	24	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	c0005	1353	10	10	0	0	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	c0006	1353	3	0	0	3	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	c0007	1353	3	0	0	0	0	3	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	c0008	1353	2	2	0	0	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	c0009	1353	1	0	1	0	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	c0010	1353	1	0	1	0	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	c0011	1353	1	0	1	0	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	c0012	1353	1	1	0	0	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT26_chr17_40761238_40777201	1/1	c0001	1407	316	65	60	135	18	36	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	c0002	1407	76	14	14	43	0	5	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	c0003	1407	6	6	0	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	c0004	1407	3	3	0	0	0	0	copy fasta	KRT26	chr17	40761238	40777201