JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT26_chr17_40761238_40777201	0/0	c0005	1407	3	2	1	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	c0006	1407	2	0	2	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	c0007	1407	2	0	0	0	0	2	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	c0008	1407	1	0	0	0	0	1	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	c0009	1407	1	1	0	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	c0010	1407	1	1	0	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	c0011	1407	1	0	1	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	c0012	1407	1	1	0	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	c0013	1407	1	1	0	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT27_chr17_40771808_40787550	0/1	c0001	1380	182	13	28	123	7	10	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0002	1380	70	7	14	46	0	3	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	1/0	c0003	1380	48	14	14	6	4	9	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0004	1380	46	10	13	9	3	11	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0005	1380	42	1	5	26	3	7	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0006	1380	17	15	1	0	0	1	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0007	1380	13	12	1	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0008	1380	10	6	2	0	0	2	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0009	1380	5	5	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0010	1380	5	5	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0011	1380	4	0	2	0	1	1	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0012	1380	3	2	1	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0013	1380	2	2	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0014	1380	2	2	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0015	1380	2	0	0	0	0	2	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0016	1380	1	1	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0017	1380	1	0	0	1	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0018	1380	1	0	0	0	0	1	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0019	1380	1	0	0	1	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0020	1380	1	0	0	1	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0021	1380	1	1	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0022	1380	1	0	1	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0023	1380	1	0	0	1	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0024	1380	1	0	1	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0025	1380	1	1	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0026	1380	1	1	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0027	1380	1	0	1	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	c0028	1380	1	0	0	0	0	1	copy fasta	KRT27	chr17	40771808	40787550
KRT28_chr17_40787196_40804959	0/0	c0001	1395	128	25	7	77	3	16	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	1/1	c0002	1395	116	8	23	72	5	6	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0003	1395	69	37	15	16	0	1	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0004	1395	57	5	11	41	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0005	1395	29	5	11	2	3	8	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0006	1395	26	10	10	0	1	5	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0007	1395	12	1	4	0	5	2	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0008	1395	10	0	0	7	0	3	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0009	1395	5	1	0	4	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0010	1395	2	0	0	0	1	1	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0011	1395	2	0	0	2	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0012	1395	2	2	0	0	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0013	1395	1	1	0	0	0	0	copy fasta	KRT28	chr17	40787196	40804959