JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT28_chr17_40787196_40804959	0/0	c0014	1395	1	0	0	1	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0015	1369	1	0	0	1	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0016	1395	1	0	1	0	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0017	1395	1	0	0	1	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0018	1395	1	0	1	0	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0019	1395	1	0	1	0	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	c0020	1395	1	1	0	0	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT2_chr12_52639558_52657211	0/0	c0001	1938	147	1	17	115	4	10	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	1/1	c0002	1920	117	47	15	38	1	14	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0003	1920	78	13	37	9	3	16	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0004	1920	65	15	5	42	1	2	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0005	1920	16	0	7	1	5	3	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0006	1920	7	0	3	1	2	1	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0007	1920	6	6	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0008	1920	6	6	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0009	1920	4	4	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0010	1920	4	4	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0011	1938	3	0	0	3	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0012	1920	2	0	2	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0013	1920	1	1	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0014	1920	1	1	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0015	1920	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0016	1920	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0017	1920	1	1	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0018	1909	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0019	1938	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0020	1920	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0021	1920	1	1	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0022	1920	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	c0023	1938	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT31_chr17_41388721_41402608	0/1	c0001	1251	405	79	74	195	15	41	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0002	1251	20	2	3	10	3	2	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0003	1251	7	1	3	2	0	1	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0004	1251	5	5	0	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0005	1251	4	0	0	4	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0006	1251	2	2	0	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0007	1251	1	0	1	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0008	1251	1	0	0	1	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0009	1251	1	1	0	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0010	1251	1	0	0	1	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0011	1251	1	1	0	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0012	1251	1	0	0	1	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0013	1251	1	0	1	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0014	1251	1	1	0	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0015	1251	1	1	0	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	c0016	1251	1	1	0	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT32_chr17_41454513_41472386	0/0	c0001	1347	105	8	21	61	9	6	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	c0002	1347	70	5	12	43	0	10	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	c0003	1347	62	9	13	38	0	2	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/1	c0004	1347	48	1	10	18	4	14	copy fasta	KRT32	chr17	41454513	41472386