JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT32_chr17_41454513_41472386	0/0	c0055	1347	1	0	0	1	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	c0056	1347	1	0	0	0	0	1	copy fasta	KRT32	chr17	41454513	41472386
KRT33A_chr17_41341092_41355828	0/1	c0001	1215	282	48	65	133	11	24	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0002	1215	88	3	12	59	2	12	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0003	1215	48	30	3	11	3	1	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0004	940	10	10	0	0	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0005	1215	3	0	0	0	0	3	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0006	1215	3	0	0	3	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0007	1215	2	0	0	0	0	2	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0008	1215	2	2	0	0	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0009	1215	1	0	0	0	0	1	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0010	1215	1	0	0	1	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0011	1215	1	0	0	1	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0012	1215	1	0	0	1	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0013	1215	1	0	1	0	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0014	1215	1	1	0	0	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0015	1215	1	0	0	1	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0016	1215	1	0	0	1	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0017	1215	1	0	1	0	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0018	1215	1	0	0	0	0	1	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	c0019	1215	1	0	0	1	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33B_chr17_41358498_41374813	0/1	c0001	1215	332	53	69	158	14	37	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0002	1215	45	25	4	11	3	2	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0003	1215	17	0	0	17	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0004	1215	8	1	3	0	0	4	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0005	1215	4	0	0	4	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0006	1215	4	4	0	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0007	1215	2	2	0	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0008	1215	1	0	0	1	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0009	1215	1	0	0	0	0	1	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0010	1215	1	0	0	0	0	1	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0011	1215	1	0	0	0	1	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0012	1215	1	0	1	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0013	1215	1	1	0	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0014	1215	1	1	0	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0015	1215	1	1	0	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0016	1215	1	1	0	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0017	1215	1	0	0	1	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0018	1215	1	1	0	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0019	1215	1	0	0	0	0	1	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	c0020	1215	1	0	1	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT34_chr17_41372669_41387306	0/1	c0001	1185	205	35	41	93	12	23	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0002	1185	149	1	29	98	3	18	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0003	1185	28	15	2	6	3	2	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0004	1185	15	11	2	2	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0005	1185	13	13	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0006	1185	6	5	0	0	0	1	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0007	1185	5	0	0	5	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0008	1185	4	4	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0009	1185	4	0	0	4	0	0	copy fasta	KRT34	chr17	41372669	41387306