JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT34_chr17_41372669_41387306	0/0	c0010	1185	3	0	3	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0011	1185	2	1	1	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0012	1185	2	0	2	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0013	1185	2	2	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0014	8490	1	0	1	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0015	1185	1	1	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0016	1185	1	1	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0017	1185	1	0	0	1	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0018	1185	1	0	0	1	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0019	1185	1	0	1	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0020	1185	1	1	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0021	1185	1	1	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0022	1185	1	1	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0023	1185	1	0	0	1	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0024	1185	1	1	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0025	1185	1	1	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	c0026	1185	1	0	0	1	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT35_chr17_41471710_41486151	0/1	c0001	1368	183	57	35	59	8	23	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	1/0	c0002	1368	135	12	24	86	6	6	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0003	1368	84	6	13	52	0	13	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0004	1368	14	4	6	0	2	2	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0005	1368	10	10	0	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0006	1368	5	4	1	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0007	1368	5	0	0	5	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0008	1368	3	0	0	3	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0009	1368	1	1	0	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0010	1368	1	0	0	1	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0011	1368	1	1	0	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0012	1368	1	1	0	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0013	1368	1	0	0	1	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0014	1368	1	1	0	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0015	1368	1	0	0	1	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0016	1368	1	0	1	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	c0017	1368	1	1	0	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT36_chr17_41481136_41494910	0/1	c0001	1404	135	19	33	60	5	17	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	1/0	c0002	1404	129	22	23	73	6	4	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0003	1404	119	21	14	72	0	12	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0004	1404	26	11	5	0	6	4	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0005	1404	16	0	1	15	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0006	1404	9	9	0	0	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0007	1404	5	0	0	5	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0008	1404	5	0	5	0	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0009	1404	4	4	0	0	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0010	1404	4	4	0	0	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0011	1404	3	0	1	0	1	1	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0012	1404	3	3	0	0	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0013	1404	2	2	0	0	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0014	1404	1	0	0	0	0	1	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0015	1404	1	1	0	0	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0016	1404	1	0	0	0	0	1	copy fasta	KRT36	chr17	41481136	41494910