JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT36_chr17_41481136_41494910	0/0	c0017	1404	1	0	0	0	0	1	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0018	1404	1	0	0	1	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	c0019	1404	1	0	0	0	0	1	copy fasta	KRT36	chr17	41481136	41494910
KRT37_chr17_41415547_41429585	0/0	c0001	1350	199	55	40	82	9	13	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0002	1350	99	3	11	69	2	14	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/1	c0003	1350	53	11	9	15	3	14	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0004	1350	18	3	3	8	3	1	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0005	1350	8	8	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0006	1350	6	5	1	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0007	1350	6	0	0	6	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0008	1350	6	0	5	0	1	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0009	1350	2	0	0	1	0	1	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0010	1350	1	1	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0011	1350	1	1	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0012	1350	1	0	1	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0013	1350	1	1	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0014	1350	1	0	0	1	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0015	1350	1	1	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0016	1350	1	0	0	1	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0017	1350	1	0	0	1	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0018	1350	1	1	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0019	1350	1	0	0	1	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0020	1350	1	0	0	0	0	1	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	c0021	1350	1	0	0	1	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT38_chr17_41431154_41445983	0/1	c0001	1371	285	51	54	135	8	36	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0002	1371	45	1	13	25	1	5	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0003	1371	30	23	4	2	0	1	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0004	1371	26	0	0	26	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0005	1371	17	3	3	7	3	1	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	1/0	c0006	1371	15	5	5	0	3	1	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0007	1371	2	0	0	2	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0008	1371	2	0	0	0	1	1	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0009	1371	1	1	0	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0010	1371	1	0	1	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0011	1371	1	1	0	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0012	1371	1	0	0	0	0	1	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0013	1371	1	1	0	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0014	1371	1	1	0	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0015	1371	1	1	0	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0016	1371	1	0	0	1	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0017	1371	1	0	0	1	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	c0018	1371	1	0	0	1	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT39_chr17_40953417_40971948	0/1	c0001	1476	259	18	52	155	9	24	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0002	1476	40	0	16	12	1	11	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0003	1476	31	30	1	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0004	1476	28	6	4	8	3	7	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0005	1476	24	8	0	14	1	1	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0006	1476	22	21	1	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0007	1476	4	4	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0008	1476	3	0	0	3	0	0	copy fasta	KRT39	chr17	40953417	40971948