JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT39_chr17_40953417_40971948	0/0	c0009	1476	2	2	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0010	1476	2	1	1	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0011	1476	2	2	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0012	1476	1	0	0	0	0	1	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0013	1476	1	1	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0014	1476	1	1	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0015	1476	1	1	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0016	1476	1	0	1	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	c0017	1476	1	1	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT3_chr12_52784685_52801117	0/0	c0001	1869	134	14	12	97	2	9	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/1	c0002	1887	118	26	39	37	9	6	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0003	1887	49	2	4	39	0	4	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0004	1887	40	0	9	23	0	8	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	1/0	c0005	1887	40	17	5	1	0	16	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0006	1908	12	6	6	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0007	1887	12	0	6	0	4	2	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0008	1887	7	6	0	0	0	1	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0009	1908	5	5	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0010	1908	5	5	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0011	1887	4	4	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0012	1887	4	3	1	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0013	1890	3	3	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0014	1887	2	1	0	0	0	1	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0015	1887	2	2	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0016	1908	2	2	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0017	1869	2	0	0	2	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0018	1887	1	0	0	0	1	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0019	1887	1	1	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0020	1908	1	1	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0021	1887	1	0	1	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0022	1887	1	1	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0023	1908	1	1	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0024	1887	1	0	0	1	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0025	1887	1	0	1	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0026	1887	1	0	1	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0027	1887	1	0	0	1	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0028	1887	1	0	0	0	0	1	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0029	1869	1	0	1	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	c0030	1869	1	0	0	1	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT40_chr17_40972715_40989326	0/1	c0001	1296	133	7	27	75	7	16	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0002	1296	72	3	12	53	1	3	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0003	1296	59	7	14	32	1	5	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0004	1296	55	23	10	11	1	10	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0005	1296	49	30	1	16	1	1	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0006	1296	30	2	9	8	3	8	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0007	1296	10	9	1	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0008	1296	8	0	4	0	0	4	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0009	1296	5	5	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0010	1296	5	0	0	5	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0011	1296	3	1	0	2	0	0	copy fasta	KRT40	chr17	40972715	40989326