JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT40_chr17_40972715_40989326	0/0	c0012	1296	3	3	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0013	1296	3	0	0	3	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0014	1296	2	2	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0015	1296	2	0	0	2	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0016	1296	2	0	0	0	2	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0017	1296	1	0	0	1	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0018	1296	1	0	0	1	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0019	1296	1	1	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0020	1296	1	1	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0021	1296	1	1	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0022	1296	1	0	0	1	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0023	1296	1	0	1	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0024	1296	1	0	1	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0025	1296	1	0	0	0	0	1	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	c0026	1296	1	1	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT4_chr12_52801549_52819116	0/0	c0001	1605	335	31	61	201	12	30	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0002	1605	65	35	6	18	1	5	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0003	1605	23	23	0	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	1/1	c0004	1563	19	0	6	2	2	7	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0005	1605	10	0	5	0	3	2	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0006	1605	3	3	0	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0007	1605	3	3	0	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0008	1605	2	2	0	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0009	1605	2	0	2	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0010	1605	2	0	2	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0011	1605	1	0	0	1	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0012	1605	1	0	0	1	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0013	1605	1	0	0	0	0	1	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0014	1563	1	0	0	0	0	1	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0015	1605	1	1	0	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	c0016	1605	1	0	0	1	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT5_chr12_52509575_52525394	1/0	c0001	1773	246	39	46	121	12	27	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0002	1773	116	7	12	86	3	8	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0003	1773	20	5	6	1	1	7	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0004	1773	16	6	7	0	1	2	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0005	1773	12	8	4	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0006	1773	5	5	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0007	1773	5	5	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0008	1773	4	4	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0009	1773	4	4	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0010	1773	3	0	3	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0011	1773	3	3	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/1	c0012	1773	3	0	0	0	1	1	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0013	1773	2	2	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0014	1773	2	2	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0015	1773	2	0	0	2	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0016	1773	1	1	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0017	1773	1	0	0	0	0	1	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0018	1773	1	0	0	1	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0019	1773	1	0	1	0	0	0	copy fasta	KRT5	chr12	52509575	52525394