JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT5_chr12_52509575_52525394	0/0	c0020	1773	1	1	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0021	1773	1	1	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0022	1773	1	1	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0023	1773	1	0	0	1	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0024	1773	1	0	1	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0025	1773	1	0	0	1	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0026	1773	1	0	0	1	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0027	1773	1	1	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	c0028	1773	1	1	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT6A_chr12_52482176_52498257	1/1	c0001	1695	134	34	24	48	5	21	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0002	1695	112	2	15	83	3	9	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0003	1695	84	13	29	23	6	13	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0004	1695	33	19	6	8	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0005	1695	6	6	0	0	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0006	1695	6	6	0	0	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0007	1695	6	6	0	0	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0008	1695	4	4	0	0	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0009	1695	3	0	0	3	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0010	1695	3	0	0	3	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0011	1695	2	0	0	2	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0012	1695	2	0	0	2	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0013	1695	2	0	0	2	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0014	1695	2	2	0	0	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0015	1695	2	1	0	0	0	1	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0016	1695	1	0	0	1	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0017	1695	1	0	0	1	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0018	1695	1	0	0	1	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0019	1695	1	0	1	0	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0020	1695	1	1	0	0	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0021	1695	1	0	0	1	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0022	1695	1	0	0	0	0	1	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0023	1695	1	0	0	1	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0024	1695	1	0	0	1	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0025	1695	1	0	1	0	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	c0026	1695	1	0	0	0	0	1	copy fasta	KRT6A	chr12	52482176	52498257
KRT6B_chr12_52441651_52457146	0/1	c0001	1695	133	12	17	91	3	9	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	1/0	c0002	1695	126	37	19	47	3	19	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0003	1695	57	4	20	23	5	5	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0004	1695	29	12	10	0	2	5	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0005	1695	23	0	0	23	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0006	1695	21	8	4	6	0	3	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0007	1695	14	11	2	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0008	1695	6	1	1	0	1	3	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0009	1695	5	5	0	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0010	1695	2	1	0	0	0	1	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0011	1695	2	2	0	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0012	1695	2	0	0	0	0	2	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0013	1695	1	0	0	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0014	1695	1	1	0	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0015	1695	1	0	0	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146