JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT6B_chr12_52441651_52457146	0/0	c0016	1695	1	0	0	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0017	1695	1	0	0	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0018	1695	1	1	0	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0019	1695	1	0	0	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0020	1695	1	1	0	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0021	1695	1	0	0	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0022	1695	1	1	0	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0023	1695	1	0	1	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0024	1695	1	1	0	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0025	1695	1	0	0	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	c0026	1155	1	0	0	0	0	1	copy fasta	KRT6B	chr12	52441651	52457146
KRT6C_chr12_52463516_52478805	0/0	c0001	1695	126	2	15	100	3	6	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/1	c0002	1695	105	17	20	46	6	15	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0003	1695	79	17	26	24	2	10	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	1/0	c0004	1695	25	18	2	0	1	3	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0005	1695	24	9	4	6	0	5	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0006	1695	17	14	2	1	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0007	1695	12	0	6	0	5	1	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0008	1695	10	0	0	10	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0009	1695	8	8	0	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0010	1695	5	5	0	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0011	1695	4	2	2	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0012	1695	3	0	0	3	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0013	1695	2	2	0	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0014	1695	2	0	0	2	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0015	1695	2	0	2	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0016	1695	1	0	0	1	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0017	1695	1	0	0	0	0	1	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0018	1695	1	1	0	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0019	1695	1	1	0	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0020	1695	1	0	1	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0021	1695	1	0	0	1	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0022	1695	1	0	0	1	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0023	1695	1	0	0	1	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0024	1695	1	0	0	0	0	1	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0025	1695	1	0	0	0	0	1	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0026	1695	1	0	0	0	1	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0027	1695	1	1	0	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0028	1695	1	0	0	0	0	1	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	c0029	1695	1	1	0	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT71_chr12_52538909_52558145	0/0	c0001	1572	153	2	34	96	8	13	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	1/1	c0002	1572	125	28	16	59	7	13	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0003	1572	101	32	17	42	1	9	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0004	1572	30	8	10	1	1	10	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0005	1572	9	8	1	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0006	1572	6	3	1	1	1	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0007	1572	4	0	4	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0008	1572	4	4	0	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0009	1572	4	3	1	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0010	1572	3	0	2	0	0	1	copy fasta	KRT71	chr12	52538909	52558145