JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AMY2A_chr1_103612427_103630780	0/0	c0019	1536	1	1	0	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0020	1536	1	0	0	1	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2B_chr1_103566589_103584534	1/1	c0001	1536	373	72	62	187	10	40	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0002	1536	11	1	6	0	3	1	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0003	1536	6	2	0	0	0	4	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0004	1536	2	0	2	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0005	1536	2	2	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0006	1536	2	2	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0007	1536	1	1	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0008	1536	1	1	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0009	1536	1	0	1	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0010	1536	1	1	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0011	1536	1	0	0	0	1	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0012	1536	1	0	0	1	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0013	1536	1	1	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0014	1536	1	0	0	0	0	1	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0015	1536	1	1	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0016	1536	1	1	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0017	1536	1	0	1	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	c0018	1536	1	1	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMZ1_chr7_2683202_2724683	0/0	c0001	1497	108	5	7	84	2	10	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	1/0	c0002	1497	88	8	31	29	5	14	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0003	1497	75	26	20	19	3	7	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0004	1497	52	11	15	19	2	5	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0005	1497	10	1	0	9	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0006	1497	10	0	0	10	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0007	1497	7	6	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0008	1497	7	0	0	7	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0009	1497	7	6	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0010	1497	6	6	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0011	1497	5	5	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0012	1497	4	3	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0013	1497	3	0	0	3	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0014	1497	3	0	0	0	2	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0015	1497	3	3	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0016	1497	2	0	0	2	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0017	1497	2	0	0	2	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0018	1497	2	1	0	0	1	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0019	1497	2	1	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0020	1497	2	0	0	0	0	2	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0021	1497	2	0	0	0	0	2	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0022	1497	2	1	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0023	1497	2	2	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0024	1497	2	0	0	0	2	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0025	1497	2	2	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0026	1497	2	0	2	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0027	1497	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0028	1497	1	0	0	0	1	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0029	1497	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0030	1497	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683