JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT71_chr12_52538909_52558145	0/0	c0011	1572	2	2	0	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0012	1572	1	1	0	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0013	1572	1	0	0	0	0	1	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0014	1572	1	1	0	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0015	1572	1	0	1	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0016	1572	1	1	0	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0017	1572	1	0	0	0	0	1	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0018	1572	1	0	0	1	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0019	1572	1	0	1	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	c0020	1572	1	1	0	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT72_chr12_52580589_52606463	0/1	c0001	1536	102	3	6	85	1	6	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	1/0	c0002	1536	94	32	27	12	8	14	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0003	1536	66	2	13	51	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0004	1536	47	9	12	19	2	5	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0005	1536	46	9	12	12	3	10	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0006	1536	24	13	4	4	1	2	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0007	1536	9	9	0	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0008	1536	8	7	1	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0009	1536	7	0	0	6	0	1	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0010	1536	3	1	2	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0011	1536	3	0	0	3	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0012	1536	3	0	0	3	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0013	1536	2	0	0	2	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0014	1536	2	2	0	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0015	1536	2	0	0	0	0	2	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0016	1536	1	0	0	1	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0017	1536	1	1	0	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0018	1536	1	0	0	1	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0019	1536	1	0	0	0	0	1	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0020	1536	1	0	0	1	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0021	1536	1	0	1	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0022	1536	1	1	0	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0023	1536	1	0	1	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0024	1536	1	0	0	0	0	1	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0025	1536	1	0	0	1	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0026	1536	1	0	0	0	1	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0027	1536	1	0	1	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0028	1536	1	0	0	1	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	c0029	1536	1	1	0	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT73_chr12_52602570_52623559	1/0	c0001	1623	185	26	44	78	9	27	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/1	c0002	1623	95	9	8	71	1	5	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0003	1623	32	17	5	4	3	3	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0004	1623	25	14	3	5	1	2	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0005	1623	22	3	8	10	0	1	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0006	1623	19	3	11	0	2	3	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0007	1623	8	0	0	8	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0008	1623	7	6	1	0	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0009	1623	7	7	0	0	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0010	1623	5	0	0	5	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0011	1623	3	3	0	0	0	0	copy fasta	KRT73	chr12	52602570	52623559