JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT73_chr12_52602570_52623559	0/0	c0012	1623	2	0	0	2	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0013	1623	2	0	0	2	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0014	1623	2	0	0	2	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0015	1623	2	2	0	0	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0016	1623	1	0	0	0	0	1	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0017	1623	1	0	0	1	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0018	1623	1	1	0	0	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0019	1623	1	0	0	1	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0020	1623	1	0	0	1	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0021	1623	1	0	0	1	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0022	1623	1	1	0	0	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	c0023	1623	1	0	0	1	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT74_chr12_52560782_52578843	0/0	c0001	1590	111	23	31	35	8	14	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/1	c0002	1590	77	0	1	69	1	5	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0003	1590	73	0	16	57	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0004	1590	29	20	1	5	0	3	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	1/0	c0005	1590	25	0	9	1	6	8	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0006	1590	20	0	4	13	1	2	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0007	1590	19	7	5	4	1	2	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0008	1590	16	5	0	9	0	2	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0009	1590	13	9	0	0	0	4	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0010	1590	10	0	10	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0011	1590	8	8	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0012	1590	7	6	0	1	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0013	1590	5	0	5	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0014	1590	4	4	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0015	1590	3	0	0	3	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0016	1590	3	3	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0017	1590	2	2	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0018	1590	2	2	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0019	1590	2	0	2	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0020	1590	2	0	0	0	0	2	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0021	1590	1	0	0	0	0	1	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0022	1590	1	0	0	0	0	1	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0023	1590	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0024	1590	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0025	1590	1	0	0	1	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0026	1590	1	0	0	0	0	1	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0027	1590	1	0	0	0	1	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0028	1590	1	0	0	0	0	1	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0029	1590	1	0	0	1	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0030	1590	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0031	1590	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0032	1590	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0033	1590	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0034	1590	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0035	1590	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0036	1590	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	c0037	1590	1	0	0	1	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT75_chr12_52419070_52439371	1/0	c0001	1656	118	21	22	55	2	17	copy fasta	KRT75	chr12	52419070	52439371