JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT75_chr12_52419070_52439371	0/1	c0002	1656	99	2	16	68	3	9	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0003	1656	61	5	19	27	4	6	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0004	1656	32	8	4	17	0	3	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0005	1656	32	28	4	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0006	1656	27	12	9	0	2	4	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0007	1656	10	10	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0008	1656	6	1	1	0	1	3	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0009	1656	6	0	0	6	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0010	1656	2	2	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0011	1656	2	0	2	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0012	1656	2	0	0	0	0	2	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0013	1656	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0014	1656	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0015	1656	1	0	1	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0016	1656	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0017	1656	1	0	0	0	0	1	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0018	1656	1	0	0	0	0	1	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0019	1656	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0020	1656	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0021	1656	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0022	1656	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0023	1656	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0024	1656	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0025	1656	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0026	1656	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0027	1656	1	0	1	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0028	1656	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0029	1656	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0030	1656	1	0	1	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	c0031	1656	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT76_chr12_52763155_52782345	0/1	c0001	1917	146	32	20	80	8	5	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0002	1917	80	0	28	44	1	7	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0003	1917	76	4	8	53	1	10	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0004	1917	52	6	6	25	1	14	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0005	1920	10	10	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0006	1917	10	1	4	1	1	3	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	1/0	c0007	1917	7	6	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0008	1917	5	5	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0009	1917	5	5	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0010	1917	5	0	5	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0011	1917	5	1	2	0	0	2	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0012	1917	4	0	1	0	2	1	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0013	1917	4	4	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0014	1920	3	3	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0015	1917	3	0	0	3	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0016	1920	3	1	2	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0017	1917	2	2	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0018	1917	2	2	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0019	1917	2	0	0	2	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0020	1917	2	0	0	2	0	0	copy fasta	KRT76	chr12	52763155	52782345