JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT76_chr12_52763155_52782345	0/0	c0021	1917	2	0	1	0	1	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0022	1917	2	2	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0023	1917	1	1	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0024	1917	1	1	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0025	1917	1	0	0	0	0	1	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0026	1917	1	0	0	0	0	1	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0027	1917	1	0	0	0	0	1	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0028	1917	1	1	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0029	1917	1	1	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0030	1917	1	1	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0031	1917	1	1	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0032	1917	1	0	1	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0033	1917	1	0	0	0	1	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0034	1917	1	1	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0035	1917	1	1	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	c0036	1917	1	0	0	0	0	1	copy fasta	KRT76	chr12	52763155	52782345
KRT77_chr12_52684626_52708524	0/0	c0001	1737	144	4	20	104	8	8	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/1	c0002	1737	109	34	16	35	4	19	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0003	1737	81	4	27	37	3	10	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0004	1737	17	17	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0005	1737	9	9	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0006	1522	8	0	6	0	2	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0007	1737	7	7	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0008	1737	6	1	3	0	0	2	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0009	1737	5	5	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	1/0	c0010	1737	4	3	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0011	1737	3	3	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0012	1737	2	0	0	0	0	2	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0013	1737	2	0	0	2	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0014	1737	2	0	0	2	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0015	1737	2	2	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0016	1737	2	2	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0017	1737	2	0	2	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0018	1737	2	2	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0019	1737	1	0	1	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0020	1713	1	0	0	0	1	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0021	1737	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0022	1713	1	0	1	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0023	1737	1	1	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0024	1737	1	0	0	0	0	1	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0025	1737	1	1	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0026	1737	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0027	1737	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0028	1737	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0029	1737	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0030	1737	1	1	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	c0031	1737	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT78_chr12_52832807_52853994	0/0	c0001	1563	163	22	34	75	8	24	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0002	1563	68	16	1	50	1	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	1/0	c0003	1563	60	4	21	24	7	3	copy fasta	KRT78	chr12	52832807	52853994