JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT78_chr12_52832807_52853994	0/0	c0004	1563	26	0	7	19	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0005	1563	10	2	6	0	2	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0006	1563	9	0	0	9	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/1	c0007	1563	9	0	2	3	0	3	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0008	1563	8	8	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0009	1563	7	7	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0010	1563	7	7	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0011	1563	6	6	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0012	1563	4	0	0	4	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0013	1563	4	4	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0014	1563	4	0	0	4	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0015	1563	3	3	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0016	1563	2	2	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0017	1563	2	2	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0018	1563	2	2	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0019	1563	2	0	2	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0020	1563	1	1	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0021	1563	1	1	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0022	1563	1	1	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0023	1563	1	0	0	0	0	1	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0024	1545	1	0	1	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0025	1563	1	1	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0026	1563	1	1	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0027	1563	1	0	0	1	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0028	1563	1	1	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0029	1563	1	0	0	1	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0030	1563	1	0	0	1	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0031	1563	1	0	0	0	0	1	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0032	1563	1	0	0	1	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	c0033	1563	1	1	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT79_chr12_52816408_52839311	0/0	c0001	1608	162	16	24	94	4	24	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0002	1608	118	35	7	68	5	3	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	1/1	c0003	1608	93	7	28	44	4	8	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0004	1608	15	0	9	0	2	4	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0005	1608	8	8	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0006	1608	7	7	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0007	1608	7	1	6	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0008	1608	6	6	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0009	1608	3	0	1	0	2	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0010	1608	2	0	0	2	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0011	1608	2	2	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0012	1608	2	2	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0013	1608	2	2	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0014	1608	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0015	1608	1	0	0	0	1	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0016	1608	1	0	0	1	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0017	1608	1	0	0	0	0	1	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0018	1608	1	0	0	1	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0019	1608	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0020	1608	1	0	1	0	0	0	copy fasta	KRT79	chr12	52816408	52839311