JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT79_chr12_52816408_52839311	0/0	c0021	1608	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0022	1608	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0023	1608	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0024	1608	1	0	1	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0025	1608	1	0	0	1	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0026	1608	1	0	0	1	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0027	1608	1	0	1	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0028	1608	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0029	1608	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0030	1608	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0031	1608	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	c0032	1608	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT7_chr12_52228243_52253921	0/0	c0001	1410	187	35	27	96	10	19	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/1	c0002	1410	155	27	30	70	7	20	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	1/0	c0003	1410	21	0	18	0	1	1	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0004	1410	18	0	0	16	0	2	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0005	1410	11	11	0	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0006	1410	9	9	0	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0007	1410	7	7	0	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0008	1410	4	4	0	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0009	1410	4	2	2	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0010	1410	4	4	0	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0011	1410	4	0	0	4	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0012	1410	3	0	2	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0013	1410	2	0	0	2	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0014	1410	1	0	1	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0015	1410	1	0	0	0	0	1	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0016	1410	1	0	0	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0017	1410	1	0	0	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0018	1410	1	0	0	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0019	1410	1	0	0	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0020	1410	1	0	0	0	0	1	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0021	1410	1	1	0	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0022	1410	1	0	0	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0023	1410	1	0	0	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	c0024	1410	1	0	0	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT80_chr12_52163996_52197014	1/0	c0001	1359	257	50	48	122	8	28	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/1	c0002	1359	122	28	23	49	7	14	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0003	1359	9	0	1	7	0	1	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0004	1359	7	0	0	5	0	2	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0005	1359	5	3	2	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0006	1359	5	1	4	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0007	1359	3	3	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0008	1359	3	3	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0009	1359	2	0	2	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0010	1359	2	2	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0011	1359	1	0	0	1	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0012	1359	1	0	0	0	0	1	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0013	1359	1	0	0	1	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0014	1359	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014