JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT80_chr12_52163996_52197014	0/0	c0015	1359	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0016	1359	1	0	1	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0017	1359	1	0	0	0	1	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0018	1359	1	0	0	1	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0019	1359	1	0	0	1	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0020	1359	1	0	1	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0021	1359	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0022	1359	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	c0023	1359	1	0	0	1	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT81_chr12_52280913_52296534	0/0	c0001	1518	101	6	23	57	2	13	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0002	1518	98	42	17	18	6	15	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0003	1518	95	8	16	68	0	3	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0004	1518	39	12	2	23	0	2	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0005	1518	38	0	10	19	5	4	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	1/0	c0006	1518	20	1	8	1	5	4	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0007	1518	7	0	0	7	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0008	1518	7	6	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0009	1518	7	7	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0010	1518	6	0	0	6	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0011	1518	4	1	0	3	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0012	1518	3	3	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0013	1518	2	0	2	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0014	1518	2	2	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0015	1518	2	2	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0016	1518	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0017	1518	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0018	1518	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0019	1518	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0020	1518	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0021	1518	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0022	1518	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0023	1518	1	0	1	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0024	1518	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0025	1518	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0026	1518	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0027	1518	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0028	1518	1	0	0	0	0	1	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0029	1518	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0030	1518	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/1	c0031	1518	1	0	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0032	1518	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0033	1518	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0034	1518	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0035	1518	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0036	1518	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0037	1518	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	c0038	1518	1	0	1	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT82_chr12_52388931_52411335	1/1	c0001	1542	232	36	46	120	7	21	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0002	1542	91	21	27	17	6	20	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0003	1542	22	18	2	0	1	1	copy fasta	KRT82	chr12	52388931	52411335