JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT82_chr12_52388931_52411335	0/0	c0004	1542	4	4	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0005	1542	3	3	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0006	1542	2	0	0	0	0	2	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0007	1542	2	1	1	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0008	1542	2	2	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0009	1542	1	0	1	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0010	1542	1	0	0	1	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0011	1542	1	0	0	1	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0012	1542	1	0	0	0	0	1	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0013	1542	1	0	0	1	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0014	1542	1	0	0	0	1	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0015	1542	1	1	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0016	1542	1	0	0	0	1	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0017	1542	1	1	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0018	1542	1	0	1	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0019	1542	1	0	0	0	0	1	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	c0020	1542	1	1	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT83_chr12_52309301_52326398	0/1	c0001	1482	153	31	26	77	7	11	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	1/0	c0002	1482	109	1	26	62	3	16	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0003	1482	63	18	15	21	5	4	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0004	1482	51	12	6	18	1	14	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0005	1482	7	7	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0006	1482	7	1	2	3	1	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0007	1479	4	4	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0008	1482	3	2	1	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0009	1482	3	0	2	1	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0010	1482	3	0	2	0	1	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0011	1482	3	3	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0012	1482	3	0	0	3	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0013	1482	2	0	0	0	0	2	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0014	1482	2	2	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0015	1482	1	0	0	0	0	1	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0016	1482	1	0	0	1	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0017	1482	1	0	1	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0018	1482	1	1	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0019	1482	1	1	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0020	1482	1	0	0	1	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0021	1482	1	1	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0022	1482	1	1	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0023	1479	1	1	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0024	1482	1	0	0	1	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0025	1482	1	1	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0026	1482	1	1	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0027	1482	1	1	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0028	1482	1	1	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	c0029	1482	1	0	1	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT84_chr12_52372812_52390652	0/0	c0001	1803	105	27	22	36	6	14	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0002	1803	104	24	30	19	9	22	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/1	c0003	1803	99	0	14	79	0	5	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	1/0	c0004	1803	61	2	10	40	2	6	copy fasta	KRT84	chr12	52372812	52390652