JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT84_chr12_52372812_52390652	0/0	c0005	1803	18	16	2	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0006	1803	15	15	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0007	1803	2	2	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0008	1803	2	0	0	2	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0009	1803	2	1	1	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0010	1803	1	0	0	0	0	1	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0011	1803	1	1	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0012	1803	1	0	1	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0013	1803	1	0	1	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0014	1803	1	0	0	1	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0015	1803	1	0	0	1	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0016	1803	1	0	0	1	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0017	1803	1	1	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0018	1803	1	1	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0019	1803	1	1	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0020	1803	1	0	0	1	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0021	1803	1	0	1	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0022	1803	1	1	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0023	1803	1	1	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0024	1803	1	0	0	0	1	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	c0025	1803	1	1	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT85_chr12_52355006_52372481	1/1	c0001	1524	375	66	79	173	14	41	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0002	1524	7	7	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0003	1524	6	2	0	0	1	3	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0004	1524	6	4	2	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0005	1524	5	3	2	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0006	1524	3	3	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0007	1524	2	1	1	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0008	1524	2	0	0	0	2	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0009	1524	2	0	0	2	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0010	1524	1	0	0	1	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0011	1524	1	1	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0012	1524	1	1	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0013	1524	1	0	0	1	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0014	1524	1	0	0	0	1	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0015	1524	1	0	0	1	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0016	1524	1	1	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0017	1524	1	0	1	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0018	1524	1	0	1	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	c0019	1524	1	1	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT86_chr12_52269645_52314163	1/0	c0001	1461	160	16	40	78	7	18	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0002	1461	141	40	21	68	4	8	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0003	1461	47	10	7	17	1	12	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0004	1461	9	0	5	0	3	1	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0005	1461	8	7	1	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0006	1461	6	4	2	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0007	1461	6	3	0	3	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0008	1461	4	0	0	4	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0009	1461	4	4	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0010	1461	3	0	2	0	1	0	copy fasta	KRT86	chr12	52269645	52314163