JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRT86_chr12_52269645_52314163	0/0	c0011	1461	3	0	0	3	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0012	1461	2	2	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0013	1461	2	0	0	0	0	2	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0014	1461	2	2	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0015	1461	2	0	0	2	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0016	1461	2	1	1	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0017	1461	2	2	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0018	1461	1	0	1	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0019	1461	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0020	1461	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0021	1461	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0022	1461	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0023	1461	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0024	1461	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0025	1461	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/1	c0026	1461	1	0	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0027	1461	1	0	0	0	0	1	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	c0028	1461	1	0	0	1	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT8_chr12_52892191_52910076	0/0	c0001	1452	187	28	35	86	8	30	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	1/0	c0002	1452	161	46	29	68	10	7	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/1	c0003	1452	11	0	3	5	0	2	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	c0004	1452	10	10	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	c0005	1452	3	3	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	c0006	1452	3	3	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	c0007	1452	3	3	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	c0008	1452	2	0	0	2	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	c0009	1452	1	0	1	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	c0010	1452	1	0	0	1	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	c0011	1452	1	0	0	0	0	1	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	c0012	1452	1	1	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	c0013	1452	1	1	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	c0014	1452	1	1	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT9_chr17_41560836_41577059	0/0	c0001	1872	190	38	41	87	6	18	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0002	1872	45	23	15	0	3	4	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0003	1872	41	18	6	11	1	5	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0004	1896	3	3	0	0	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0005	1872	3	3	0	0	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0006	1872	3	0	0	3	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0007	1872	3	0	3	0	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0008	1872	2	2	0	0	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0009	1872	2	0	2	0	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0010	1872	1	0	0	0	0	1	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0011	1872	1	0	1	0	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0012	1872	1	1	0	0	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0013	1872	1	0	0	1	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0014	1872	1	0	0	1	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0015	1872	1	0	0	1	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0016	1872	1	0	0	0	0	1	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	c0017	1872	1	0	0	0	0	1	copy fasta	KRT9	chr17	41560836	41577059
KRTAP1-1_chr17_41035541_41046450	0/1	c0001	534	235	45	50	96	11	32	copy fasta	KRTAP1-1	chr17	41035541	41046450