JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AMZ1_chr7_2683202_2724683	0/0	c0031	1497	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0032	1497	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0033	1497	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0034	1497	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0035	1497	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0036	1497	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0037	1497	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0038	1497	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/1	c0039	1497	1	0	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0040	1497	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0041	1497	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0042	1497	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0043	1497	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0044	1497	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0045	1497	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0046	1497	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0047	1497	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0048	1497	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0049	1497	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0050	1497	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0051	1497	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0052	1497	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0053	1497	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	c0054	1497	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ2_chr17_68243043_68262155	0/0	c0001	1083	169	53	39	53	6	18	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/1	c0002	1083	154	26	28	76	7	16	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	1/0	c0003	1083	100	4	15	62	5	13	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	c0004	1083	5	5	0	0	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	c0005	1083	2	0	0	0	0	2	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	c0006	1083	2	2	0	0	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	c0007	1083	2	0	0	2	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	c0008	1083	1	0	0	0	0	1	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	c0009	1083	1	1	0	0	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	c0010	1083	1	0	0	1	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	c0011	1083	1	1	0	0	0	0	copy fasta	AMZ2	chr17	68243043	68262155
ANAPC10_chr4_144989576_145103196	1/1	c0001	558	336	80	62	140	14	38	copy fasta	ANAPC10	chr4	144989576	145103196
ANAPC11_chr17_81886723_81905255	1/1	c0001	255	311	84	66	104	10	45	copy fasta	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	c0002	255	1	0	0	0	0	1	copy fasta	ANAPC11	chr17	81886723	81905255
ANAPC13_chr3_134472706_134490985	1/1	c0001	225	392	90	74	166	14	46	copy fasta	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	c0002	225	2	2	0	0	0	0	copy fasta	ANAPC13	chr3	134472706	134490985
ANAPC15_chr11_72104587_72117695	1/1	c0001	366	319	75	60	139	8	35	copy fasta	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	c0002	366	89	19	12	45	2	11	copy fasta	ANAPC15	chr11	72104587	72117695
ANAPC16_chr10_72211012_72240860	1/1	c0001	333	321	72	55	148	7	37	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	c0002	333	29	25	3	0	1	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	c0003	333	1	0	0	0	0	1	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	c0004	333	1	1	0	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC1_chr2_111762640_111889193	0/0	c0001	5835	115	32	20	47	6	10	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0002	5835	62	5	15	37	0	5	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/1	c0003	5835	42	2	12	20	1	6	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0004	5835	36	1	10	17	1	7	copy fasta	ANAPC1	chr2	111762640	111889193