JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
KRTAP10-6_chr21_44586268_44597505	0/0	c0009	1470	8	8	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0010	1098	7	0	1	0	6	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0011	1113	6	0	6	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0012	1098	6	1	1	4	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0013	1113	5	5	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0014	1455	5	5	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0015	1113	4	4	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0016	1113	4	4	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0017	1113	4	0	3	0	1	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0018	1470	4	0	4	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0019	1137	4	0	0	4	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0020	1113	4	0	0	2	2	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0021	1098	4	4	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0022	1470	4	4	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0023	1251	3	2	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0024	1251	2	2	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0025	1470	2	0	1	1	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0026	1113	2	0	0	2	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0027	1098	2	0	0	2	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0028	1470	2	1	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0029	1470	2	0	2	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0030	1098	2	1	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0031	1113	2	2	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0032	1113	2	2	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0033	1098	1	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0034	1098	1	0	0	1	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0035	1098	1	0	0	1	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0036	1098	1	0	0	1	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0037	1098	1	0	0	1	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0038	1113	1	0	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0039	1470	1	0	0	1	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0040	1113	1	0	0	1	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0041	1470	1	0	0	1	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0042	1470	1	0	0	1	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0043	1113	1	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0044	1113	1	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0045	1113	1	0	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0046	1470	1	0	0	0	1	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0047	1485	1	0	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0048	1113	1	0	0	0	1	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0049	1470	1	0	0	1	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0050	987	1	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0051	1113	1	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0052	1251	1	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0053	1098	1	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0054	1098	1	0	0	1	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0055	1098	1	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0056	1236	1	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0057	1236	1	0	0	1	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	c0058	1098	1	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505