JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANAPC1_chr2_111762640_111889193	0/0	c0005	5835	30	8	0	22	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0006	5835	29	0	10	12	4	3	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0007	5835	19	19	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0008	5835	6	6	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0009	5835	3	3	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0010	5835	3	2	1	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0011	5835	2	0	1	0	1	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0012	5835	2	2	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0013	5835	1	1	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0014	5835	1	1	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0015	5835	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0016	5835	1	1	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0017	5835	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0018	5835	1	0	0	0	1	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0019	5835	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0020	5835	1	0	0	0	0	1	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0021	5835	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0022	5835	1	1	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0023	5835	1	0	1	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0024	5835	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	1/0	c0025	5835	1	0	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0026	5835	1	1	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0027	5835	1	0	0	0	0	1	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0028	5835	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0029	5835	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0030	5835	1	0	0	0	0	1	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0031	5835	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0032	5835	1	1	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	c0033	5835	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC2_chr9_137169784_137193560	1/0	c0001	2469	320	70	60	156	11	22	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	c0002	2469	38	21	1	7	0	9	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/1	c0003	2469	30	0	10	1	4	14	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	c0004	2469	10	0	0	10	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	c0005	2469	4	0	0	4	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	c0006	2469	3	0	2	0	1	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	c0007	2469	2	0	0	2	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	c0008	2469	2	2	0	0	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	c0009	2469	1	0	0	0	0	1	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	c0010	2469	1	0	0	1	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	c0011	2469	1	0	0	1	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	c0012	2469	1	1	0	0	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	c0013	2469	1	0	1	0	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	c0014	2469	1	1	0	0	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	c0015	2469	1	1	0	0	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC4_chr4_25372263_25423498	1/0	c0001	2427	199	35	29	109	4	21	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	c0002	2427	149	50	29	52	3	15	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	c0003	2427	57	0	15	29	3	10	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	c0004	2427	18	0	0	18	0	0	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	c0005	2427	14	10	4	0	0	0	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/1	c0006	2427	14	0	7	0	4	2	copy fasta	ANAPC4	chr4	25372263	25423498