JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRTAP13-2_chr21_30366390_30377271	0/0	c0004	528	16	8	2	1	0	5	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	c0005	528	5	4	1	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	c0006	528	3	2	1	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	c0007	528	1	0	0	0	0	1	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	c0008	528	1	0	0	1	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	c0009	528	1	1	0	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	c0010	528	1	1	0	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	c0011	528	1	1	0	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	c0012	528	1	0	1	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	c0013	528	1	1	0	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	c0014	528	1	1	0	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-3_chr21_30420380_30430926	1/1	c0001	519	394	82	74	182	16	38	copy fasta	KRTAP13-3	chr21	30420380	30430926
KRTAP13-3_chr21_30420380_30430926	0/0	c0002	519	17	15	2	0	0	0	copy fasta	KRTAP13-3	chr21	30420380	30430926
KRTAP13-3_chr21_30420380_30430926	0/0	c0003	519	1	0	0	1	0	0	copy fasta	KRTAP13-3	chr21	30420380	30430926
KRTAP13-3_chr21_30420380_30430926	0/0	c0004	519	1	0	0	1	0	0	copy fasta	KRTAP13-3	chr21	30420380	30430926
KRTAP13-3_chr21_30420380_30430926	0/0	c0005	519	1	1	0	0	0	0	copy fasta	KRTAP13-3	chr21	30420380	30430926
KRTAP13-4_chr21_30425220_30436026	1/0	c0001	483	190	18	24	128	6	13	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/1	c0002	483	184	54	40	57	9	23	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	c0003	483	15	13	2	0	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	c0004	483	4	4	0	0	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	c0005	483	4	0	3	0	1	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	c0006	483	3	0	2	1	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	c0007	483	2	0	0	0	0	2	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	c0008	483	2	2	0	0	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	c0009	483	1	1	0	0	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	c0010	483	1	0	1	0	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	c0011	483	1	1	0	0	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	c0012	483	1	1	0	0	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP15-1_chr21_30435275_30445869	0/1	c0001	414	210	57	42	72	7	31	copy fasta	KRTAP15-1	chr21	30435275	30445869
KRTAP15-1_chr21_30435275_30445869	1/0	c0002	414	208	37	29	123	7	11	copy fasta	KRTAP15-1	chr21	30435275	30445869
KRTAP15-1_chr21_30435275_30445869	0/0	c0003	414	3	0	3	0	0	0	copy fasta	KRTAP15-1	chr21	30435275	30445869
KRTAP15-1_chr21_30435275_30445869	0/0	c0004	414	3	0	0	3	0	0	copy fasta	KRTAP15-1	chr21	30435275	30445869
KRTAP15-1_chr21_30435275_30445869	0/0	c0005	414	2	0	0	0	0	2	copy fasta	KRTAP15-1	chr21	30435275	30445869
KRTAP16-1_chr17_41302700_41314309	0/0	c0001	1554	244	32	62	111	12	27	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0002	1554	90	7	11	57	2	13	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0003	1554	23	15	6	1	0	1	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0004	1554	22	5	3	9	3	2	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0005	1554	13	13	0	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0006	1554	11	10	1	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0007	1554	3	3	0	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0008	1554	2	0	0	2	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0009	1554	2	2	0	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0010	1554	1	1	0	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0011	1554	1	0	1	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0012	1576	1	0	0	0	1	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0013	1554	1	0	0	1	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/1	c0014	1554	1	0	0	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0015	1554	1	0	1	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0016	1554	1	1	0	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	c0017	1554	1	0	0	0	0	1	copy fasta	KRTAP16-1	chr17	41302700	41314309