JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRTAP19-8_chr21_31033159_31043476	1/1	c0001	192	264	38	50	135	11	28	copy fasta	KRTAP19-8	chr21	31033159	31043476
KRTAP19-8_chr21_31033159_31043476	0/0	c0002	192	64	28	19	15	0	2	copy fasta	KRTAP19-8	chr21	31033159	31043476
KRTAP19-8_chr21_31033159_31043476	0/0	c0003	192	50	28	3	14	1	4	copy fasta	KRTAP19-8	chr21	31033159	31043476
KRTAP2-1_chr17_41041541_41052316	0/1	c0001	387	255	62	49	95	15	33	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	c0002	387	76	10	14	48	2	2	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	c0003	387	44	3	12	28	1	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	c0004	387	20	16	1	3	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	c0005	387	3	0	2	1	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	c0006	63	3	2	0	0	0	1	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	c0007	387	2	2	0	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	c0008	387	2	0	2	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	c0009	387	1	0	0	1	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	c0010	387	1	1	0	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-2_chr17_41049498_41060230	0/0	c0001	387	158	24	30	95	4	5	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/1	c0002	477	133	28	32	37	12	23	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0003	372	58	3	4	40	0	11	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0004	477	14	0	11	0	2	1	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0005	387	12	12	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0006	387	11	10	1	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0007	387	7	7	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0008	477	5	0	0	5	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0009	387	2	2	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0010	48	2	0	2	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0011	388	1	0	0	0	0	1	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0012	478	1	0	0	1	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0013	388	1	0	0	1	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0014	567	1	0	0	0	0	1	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0015	387	1	0	0	1	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0016	387	1	1	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0017	332	1	1	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0018	387	1	1	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	c0019	387	1	1	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-3_chr17_41054240_41065114	0/0	c0000	0	2	0	1	0	0	1	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/1	c0001	387	233	33	48	99	13	39	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	c0002	387	76	10	17	43	2	4	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	c0003	387	74	3	11	57	1	2	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	c0004	387	30	28	2	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	c0005	387	8	8	0	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	c0006	388	8	8	0	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	c0007	387	4	2	1	1	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	c0008	387	2	0	2	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	c0009	387	1	0	0	1	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	c0010	387	1	0	0	1	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	c0011	387	1	1	0	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	c0012	387	1	1	0	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-4_chr17_41060116_41070879	0/1	c0001	387	369	53	78	187	15	35	copy fasta	KRTAP2-4	chr17	41060116	41070879
KRTAP2-4_chr17_41060116_41070879	0/0	c0002	387	21	7	4	3	1	6	copy fasta	KRTAP2-4	chr17	41060116	41070879
KRTAP2-4_chr17_41060116_41070879	0/0	c0003	387	14	14	0	0	0	0	copy fasta	KRTAP2-4	chr17	41060116	41070879
KRTAP2-4_chr17_41060116_41070879	0/0	c0004	387	12	11	1	0	0	0	copy fasta	KRTAP2-4	chr17	41060116	41070879
KRTAP2-4_chr17_41060116_41070879	0/0	c0005	387	10	9	1	0	0	0	copy fasta	KRTAP2-4	chr17	41060116	41070879