JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRTAP4-16_chr17_41096502_41107209	0/0	c0019	708	1	1	0	0	0	0	copy fasta	KRTAP4-16	chr17	41096502	41107209
KRTAP4-16_chr17_41096502_41107209	0/0	c0020	708	1	0	0	1	0	0	copy fasta	KRTAP4-16	chr17	41096502	41107209
KRTAP4-16_chr17_41096502_41107209	0/0	c0021	708	1	0	0	0	0	1	copy fasta	KRTAP4-16	chr17	41096502	41107209
KRTAP4-16_chr17_41096502_41107209	0/0	c0022	708	1	0	1	0	0	0	copy fasta	KRTAP4-16	chr17	41096502	41107209
KRTAP4-16_chr17_41096502_41107209	0/0	c0023	708	1	1	0	0	0	0	copy fasta	KRTAP4-16	chr17	41096502	41107209
KRTAP4-16_chr17_41096502_41107209	0/0	c0024	708	1	0	0	0	1	0	copy fasta	KRTAP4-16	chr17	41096502	41107209
KRTAP4-1_chr17_41179100_41189911	0/1	c0001	384	393	83	77	173	13	46	copy fasta	KRTAP4-1	chr17	41179100	41189911
KRTAP4-1_chr17_41179100_41189911	1/0	c0002	441	24	4	3	11	3	2	copy fasta	KRTAP4-1	chr17	41179100	41189911
KRTAP4-1_chr17_41179100_41189911	0/0	c0003	384	6	6	0	0	0	0	copy fasta	KRTAP4-1	chr17	41179100	41189911
KRTAP4-1_chr17_41179100_41189911	0/0	c0004	384	1	1	0	0	0	0	copy fasta	KRTAP4-1	chr17	41179100	41189911
KRTAP4-1_chr17_41179100_41189911	0/0	c0005	384	1	1	0	0	0	0	copy fasta	KRTAP4-1	chr17	41179100	41189911
KRTAP4-1_chr17_41179100_41189911	0/0	c0006	384	1	1	0	0	0	0	copy fasta	KRTAP4-1	chr17	41179100	41189911
KRTAP4-2_chr17_41172446_41183221	0/1	c0001	411	373	87	73	166	11	35	copy fasta	KRTAP4-2	chr17	41172446	41183221
KRTAP4-2_chr17_41172446_41183221	1/0	c0002	411	25	4	3	12	3	2	copy fasta	KRTAP4-2	chr17	41172446	41183221
KRTAP4-2_chr17_41172446_41183221	0/0	c0003	411	5	0	4	0	0	1	copy fasta	KRTAP4-2	chr17	41172446	41183221
KRTAP4-2_chr17_41172446_41183221	0/0	c0004	411	2	2	0	0	0	0	copy fasta	KRTAP4-2	chr17	41172446	41183221
KRTAP4-2_chr17_41172446_41183221	0/0	c0005	651	1	1	0	0	0	0	copy fasta	KRTAP4-2	chr17	41172446	41183221
KRTAP4-3_chr17_41162231_41173221	0/0	c0001	498	170	33	41	78	2	16	copy fasta	KRTAP4-3	chr17	41162231	41173221
KRTAP4-3_chr17_41162231_41173221	0/1	c0002	693	150	6	27	95	6	15	copy fasta	KRTAP4-3	chr17	41162231	41173221
KRTAP4-3_chr17_41162231_41173221	1/0	c0003	588	45	15	8	15	3	3	copy fasta	KRTAP4-3	chr17	41162231	41173221
KRTAP4-3_chr17_41162231_41173221	0/0	c0004	618	11	10	1	0	0	0	copy fasta	KRTAP4-3	chr17	41162231	41173221
KRTAP4-3_chr17_41162231_41173221	0/0	c0005	693	10	10	0	0	0	0	copy fasta	KRTAP4-3	chr17	41162231	41173221
KRTAP4-3_chr17_41162231_41173221	0/0	c0006	603	10	10	0	0	0	0	copy fasta	KRTAP4-3	chr17	41162231	41173221
KRTAP4-3_chr17_41162231_41173221	0/0	c0007	708	7	6	1	0	0	0	copy fasta	KRTAP4-3	chr17	41162231	41173221
KRTAP4-3_chr17_41162231_41173221	0/0	c0008	618	3	3	0	0	0	0	copy fasta	KRTAP4-3	chr17	41162231	41173221
KRTAP4-3_chr17_41162231_41173221	0/0	c0009	498	2	0	0	0	0	2	copy fasta	KRTAP4-3	chr17	41162231	41173221
KRTAP4-3_chr17_41162231_41173221	0/0	c0010	694	1	0	0	0	1	0	copy fasta	KRTAP4-3	chr17	41162231	41173221
KRTAP4-3_chr17_41162231_41173221	0/0	c0011	693	1	1	0	0	0	0	copy fasta	KRTAP4-3	chr17	41162231	41173221
KRTAP4-4_chr17_41154649_41165748	1/1	c0001	501	357	50	70	180	14	41	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	c0002	501	15	14	1	0	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	c0003	501	13	1	0	11	0	1	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	c0004	501	11	10	1	0	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	c0005	501	10	10	0	0	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	c0006	501	5	5	0	0	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	c0007	501	3	0	0	3	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	c0008	501	2	0	0	2	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	c0009	501	2	2	0	0	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	c0010	486	1	0	1	0	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	c0011	501	1	0	1	0	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-5_chr17_41143924_41154825	0/0	c0001	561	175	32	33	87	4	19	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	1/1	c0002	546	131	6	30	72	7	14	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	c0003	561	28	17	7	3	0	1	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	c0004	561	17	1	2	9	3	2	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	c0005	546	17	17	0	0	0	0	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	c0006	561	9	9	0	0	0	0	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	c0007	561	8	1	3	0	2	2	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	c0008	561	6	6	0	0	0	0	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	c0009	546	4	3	1	0	0	0	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	c0010	576	3	0	2	0	0	1	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	c0011	546	1	0	0	1	0	0	copy fasta	KRTAP4-5	chr17	41143924	41154825