JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRTAP4-5_chr17_41143924_41154825	0/0	c0012	561	1	1	0	0	0	0	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	c0013	561	1	1	0	0	0	0	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	c0014	546	1	0	0	0	0	1	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-6_chr17_41134433_41145544	1/1	c0001	618	330	54	61	159	11	43	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	c0002	618	59	4	15	39	1	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	c0003	618	19	18	1	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	c0004	606	11	11	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	c0005	618	10	1	4	0	2	3	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	c0006	618	2	2	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	c0007	618	1	0	1	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	c0008	618	1	1	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	c0009	618	1	1	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	c0010	618	1	1	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	c0011	618	1	1	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	c0012	618	1	1	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	c0013	606	1	1	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-7_chr17_41079150_41090144	0/0	c0001	633	153	53	24	51	6	19	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	1/0	c0002	468	142	6	26	88	5	16	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/1	c0003	633	78	7	16	41	6	7	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0004	468	16	16	0	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0005	558	15	2	4	3	1	5	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0006	633	10	0	10	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0007	333	7	7	0	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0008	633	5	0	0	5	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0009	468	4	2	2	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0010	468	2	0	0	2	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0011	618	2	2	0	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0012	468	1	0	0	1	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0013	468	1	0	0	1	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0014	468	1	1	0	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0015	633	1	0	0	0	0	1	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0016	633	1	0	1	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0017	634	1	0	0	1	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0018	633	1	0	1	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	c0019	633	1	0	0	1	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-8_chr17_41091981_41103142	0/0	c0001	589	172	50	31	57	9	25	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	1/0	c0002	558	141	8	24	86	6	16	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0003	589	50	6	13	30	1	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0004	663	19	18	1	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0005	559	8	0	2	5	0	1	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0006	663	7	6	1	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/1	c0007	589	4	0	1	0	1	1	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0008	589	3	3	0	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0009	590	3	0	0	3	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0010	589	1	1	0	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0011	590	1	0	0	1	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0012	484	1	0	0	0	1	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0013	589	1	0	1	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0014	664	1	1	0	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0015	558	1	0	0	1	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142