JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRTAP4-8_chr17_41091981_41103142	0/0	c0016	558	1	0	0	0	0	1	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0017	558	1	0	0	1	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	c0018	558	1	1	0	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-9_chr17_41100389_41111488	0/0	c0001	633	166	49	37	45	9	26	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0002	633	127	5	13	92	3	14	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0003	483	53	4	14	34	1	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0004	633	14	13	1	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0005	633	12	0	0	10	1	1	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0006	633	9	1	4	3	0	1	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0007	633	8	0	3	3	2	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0008	633	7	0	6	0	0	1	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0009	633	4	4	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0010	634	3	0	0	3	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0011	603	3	2	1	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0012	633	1	1	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0013	633	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0014	484	1	0	1	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0015	486	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0016	633	1	0	0	0	0	1	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0017	513	1	1	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0018	635	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0019	634	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0020	635	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0021	633	1	1	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0022	633	1	0	0	0	0	1	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0023	633	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0024	483	1	1	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0025	633	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0026	499	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0027	633	1	0	0	0	0	1	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	c0028	483	1	1	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP5-10_chr11_71560563_71571735	1/0	c0001	609	184	46	36	67	8	26	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0002	660	183	32	34	102	6	9	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0003	660	29	0	7	22	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0004	609	29	0	3	17	2	7	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0005	660	15	15	0	0	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/1	c0006	660	9	0	5	0	0	3	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0007	630	6	0	0	6	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0008	660	2	2	0	0	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0009	609	2	0	1	0	0	1	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0010	639	1	0	0	1	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0011	660	1	0	0	1	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0012	660	1	1	0	0	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0013	600	1	1	0	0	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0014	660	1	1	0	0	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0015	660	1	0	0	1	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0016	549	1	0	0	1	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0017	639	1	0	0	1	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	c0018	609	1	0	0	1	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-11_chr11_71576855_71587875	1/1	c0001	471	434	75	81	211	16	49	copy fasta	KRTAP5-11	chr11	71576855	71587875