JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANAPC4_chr4_25372263_25423498	0/0	c0007	2427	2	2	0	0	0	0	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	c0008	2427	1	1	0	0	0	0	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	c0009	2427	1	1	0	0	0	0	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	c0010	2427	1	1	0	0	0	0	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC5_chr12_121303245_121357411	1/1	c0001	2268	258	76	53	96	6	25	copy fasta	ANAPC5	chr12	121303245	121357411
ANAPC5_chr12_121303245_121357411	0/0	c0002	2268	10	8	2	0	0	0	copy fasta	ANAPC5	chr12	121303245	121357411
ANAPC5_chr12_121303245_121357411	0/0	c0003	2268	3	0	0	0	0	3	copy fasta	ANAPC5	chr12	121303245	121357411
ANAPC5_chr12_121303245_121357411	0/0	c0004	2268	2	2	0	0	0	0	copy fasta	ANAPC5	chr12	121303245	121357411
ANAPC5_chr12_121303245_121357411	0/0	c0005	2268	2	0	0	2	0	0	copy fasta	ANAPC5	chr12	121303245	121357411
ANAPC5_chr12_121303245_121357411	0/0	c0006	2268	1	1	0	0	0	0	copy fasta	ANAPC5	chr12	121303245	121357411
ANAPC5_chr12_121303245_121357411	0/0	c0007	2268	1	0	1	0	0	0	copy fasta	ANAPC5	chr12	121303245	121357411
ANAPC5_chr12_121303245_121357411	0/0	c0008	2268	1	1	0	0	0	0	copy fasta	ANAPC5	chr12	121303245	121357411
ANAPC7_chr12_110367900_110408708	1/1	c0001	1698	276	82	62	78	18	34	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	c0002	1698	14	0	0	14	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	c0003	1698	6	5	1	0	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	c0004	1698	1	0	1	0	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	c0005	1686	1	1	0	0	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANGEL1_chr14_76781009_76817882	1/1	c0001	2013	291	74	52	123	10	30	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0002	2013	66	8	7	45	2	4	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0003	2013	15	4	6	0	1	4	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0004	2013	8	1	1	0	3	3	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0005	2013	2	0	0	2	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0006	2013	2	2	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0007	2013	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0008	2013	1	0	0	0	0	1	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0009	2013	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0010	2013	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0011	2013	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0012	2013	1	0	0	0	0	1	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0013	2013	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0014	2013	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0015	2013	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0016	2013	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0017	2013	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	c0018	2013	1	0	0	0	0	1	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL2_chr1_212987182_213020867	1/1	c0001	1635	372	86	70	168	12	34	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	c0002	1635	6	6	0	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	c0003	1635	4	3	1	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	c0004	1635	3	0	0	3	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	c0005	1635	2	2	0	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	c0006	1635	1	0	1	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	c0007	1635	1	1	0	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	c0008	1635	1	0	0	1	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	c0009	1635	1	0	0	1	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	c0010	1635	1	0	0	1	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGPT1_chr8_107244482_107502918	1/1	c0001	1497	288	84	53	101	12	36	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	c0002	1497	1	0	1	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	c0003	1497	1	0	1	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	c0004	1497	1	0	1	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	c0005	1497	1	0	0	1	0	0	copy fasta	ANGPT1	chr8	107244482	107502918