JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRTAP5-7_chr11_71522267_71533669	0/0	c0010	468	1	0	1	0	0	0	copy fasta	KRTAP5-7	chr11	71522267	71533669
KRTAP5-7_chr11_71522267_71533669	0/0	c0011	528	1	0	0	0	0	1	copy fasta	KRTAP5-7	chr11	71522267	71533669
KRTAP5-8_chr11_71533025_71544209	0/1	c0001	585	173	29	31	101	3	8	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	c0002	564	166	25	36	65	8	32	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	c0003	642	54	26	11	14	1	2	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	c0004	585	13	12	1	0	0	0	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	c0005	477	11	0	0	11	0	0	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	c0006	642	10	0	0	10	0	0	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	c0007	564	5	0	0	5	0	0	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	1/0	c0008	564	4	0	3	0	0	0	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	c0009	606	2	2	0	0	0	0	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	c0010	564	1	1	0	0	0	0	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	c0011	564	1	1	0	0	0	0	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	c0012	585	1	0	0	1	0	0	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	c0013	642	1	0	0	1	0	0	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-9_chr11_71543420_71554608	1/1	c0001	510	334	56	61	163	14	38	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	c0002	510	56	22	12	20	1	1	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	c0003	510	12	11	1	0	0	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	c0004	510	6	2	0	3	0	1	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	c0005	366	5	5	0	0	0	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	c0006	510	4	0	3	0	1	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	c0007	510	2	0	0	0	0	2	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	c0008	510	1	1	0	0	0	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	c0009	510	1	1	0	0	0	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	c0010	510	1	0	1	0	0	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP6-1_chr21_30608431_30618930	1/1	c0001	216	366	81	68	161	16	38	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-1_chr21_30608431_30618930	0/0	c0002	216	7	0	0	4	0	3	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-1_chr21_30608431_30618930	0/0	c0003	216	3	3	0	0	0	0	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-1_chr21_30608431_30618930	0/0	c0004	216	2	2	0	0	0	0	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-1_chr21_30608431_30618930	0/0	c0005	237	1	0	0	1	0	0	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-1_chr21_30608431_30618930	0/0	c0006	195	1	0	0	0	0	1	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-2_chr21_30593590_30603902	1/1	c0001	189	415	71	74	207	16	45	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-2_chr21_30593590_30603902	0/0	c0002	189	11	11	0	0	0	0	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-2_chr21_30593590_30603902	0/0	c0003	190	9	9	0	0	0	0	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-2_chr21_30593590_30603902	0/0	c0004	189	3	0	0	0	0	3	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-2_chr21_30593590_30603902	0/0	c0005	189	1	0	0	1	0	0	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-2_chr21_30593590_30603902	0/0	c0006	189	1	1	0	0	0	0	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-2_chr21_30593590_30603902	0/0	c0007	189	1	0	0	1	0	0	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-2_chr21_30593590_30603902	0/0	c0008	189	1	0	0	1	0	0	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-3_chr21_30587440_30598075	1/0	c0001	333	189	42	17	107	8	14	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/1	c0002	333	180	41	40	57	10	31	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	c0003	333	52	1	10	41	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	c0004	333	4	0	0	4	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	c0005	333	3	0	0	0	0	3	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	c0006	333	2	2	0	0	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	c0007	333	1	1	0	0	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	c0008	333	1	0	1	0	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	c0009	312	1	0	0	1	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	c0010	333	1	1	0	0	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP7-1_chr21_30824039_30834759	1/0	c0001	264	225	54	31	111	9	19	copy fasta	KRTAP7-1	chr21	30824039	30834759