JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRTAP7-1_chr21_30824039_30834759	0/1	c0002	264	194	37	39	90	2	25	copy fasta	KRTAP7-1	chr21	30824039	30834759
KRTAP7-1_chr21_30824039_30834759	0/0	c0003	264	5	0	2	0	3	0	copy fasta	KRTAP7-1	chr21	30824039	30834759
KRTAP7-1_chr21_30824039_30834759	0/0	c0004	264	1	1	0	0	0	0	copy fasta	KRTAP7-1	chr21	30824039	30834759
KRTAP7-1_chr21_30824039_30834759	0/0	c0005	264	1	0	0	1	0	0	copy fasta	KRTAP7-1	chr21	30824039	30834759
KRTAP8-1_chr21_30807697_30818274	1/1	c0001	192	408	92	68	186	16	44	copy fasta	KRTAP8-1	chr21	30807697	30818274
KRTAP9-1_chr17_41184887_41195639	0/1	c0001	780	385	89	69	187	10	29	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	c0002	780	43	1	10	14	1	17	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	1/0	c0003	753	21	1	2	12	3	2	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	c0004	780	2	2	0	0	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	c0005	765	2	0	0	2	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	c0006	780	2	2	0	0	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	c0007	780	1	1	0	0	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	c0008	780	1	0	1	0	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	c0009	780	1	0	0	1	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	c0010	753	1	1	0	0	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	c0011	795	1	1	0	0	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-2_chr17_41221648_41232652	0/1	c0001	525	281	53	60	127	9	31	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0002	525	79	2	11	54	1	11	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0003	525	23	2	2	14	3	2	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0004	364	11	11	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0005	495	10	0	0	10	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0006	513	6	0	5	0	1	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0007	525	6	6	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0008	525	4	3	1	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0009	525	3	2	1	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0010	525	3	0	0	3	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0011	525	2	0	0	0	2	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0012	525	2	2	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0013	525	1	1	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0014	525	1	0	0	1	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0015	525	1	0	0	0	0	1	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0016	525	1	1	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0017	525	1	0	0	0	0	1	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0018	525	1	1	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	c0019	525	1	0	0	1	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-3_chr17_41227449_41238454	0/1	c0001	480	293	53	61	139	9	30	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	c0002	480	108	14	13	67	2	12	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	c0003	480	34	18	2	10	2	2	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	c0004	480	2	0	0	2	0	0	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	c0005	480	1	1	0	0	0	0	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	c0006	480	1	0	0	0	1	0	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-4_chr17_41244687_41255653	0/1	c0001	465	273	45	57	138	10	22	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	c0002	465	142	43	17	62	5	15	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	c0003	465	11	1	5	0	3	2	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	c0004	465	4	0	0	4	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	c0005	480	2	0	0	2	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	c0006	465	2	2	0	0	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	c0007	465	1	0	1	0	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	c0008	465	1	0	0	1	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	c0009	465	1	0	0	1	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653