JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRTAP9-4_chr17_41244687_41255653	0/0	c0010	465	1	0	0	1	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	c0011	465	1	0	0	0	0	1	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	c0012	465	1	0	0	1	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	c0013	465	1	1	0	0	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-6_chr17_41260378_41270860	0/0	c0001	83	141	33	37	51	8	12	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-6_chr17_41260378_41270860	0/0	c0002	483	91	38	7	35	2	9	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-6_chr17_41260378_41270860	0/0	c0003	483	6	1	4	0	0	1	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-6_chr17_41260378_41270860	0/0	c0004	483	4	3	1	0	0	0	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-6_chr17_41260378_41270860	0/0	c0005	483	2	2	0	0	0	0	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-6_chr17_41260378_41270860	0/0	c0006	86	1	0	0	1	0	0	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-6_chr17_41260378_41270860	0/0	c0007	146	1	0	0	1	0	0	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-6_chr17_41260378_41270860	0/0	c0008	483	1	1	0	0	0	0	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-6_chr17_41260378_41270860	0/0	c0009	218	1	0	1	0	0	0	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-7_chr17_41270698_41281207	0/1	c0001	510	233	58	46	94	16	18	copy fasta	KRTAP9-7	chr17	41270698	41281207
KRTAP9-7_chr17_41270698_41281207	0/0	c0002	510	13	12	1	0	0	0	copy fasta	KRTAP9-7	chr17	41270698	41281207
KRTAP9-7_chr17_41270698_41281207	0/0	c0003	510	6	6	0	0	0	0	copy fasta	KRTAP9-7	chr17	41270698	41281207
KRTAP9-7_chr17_41270698_41281207	0/0	c0004	510	3	2	1	0	0	0	copy fasta	KRTAP9-7	chr17	41270698	41281207
KRTAP9-7_chr17_41270698_41281207	0/0	c0005	510	2	2	0	0	0	0	copy fasta	KRTAP9-7	chr17	41270698	41281207
KRTAP9-8_chr17_41232999_41244004	0/0	c0001	480	205	39	49	85	8	24	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	1/0	c0002	480	112	10	15	67	5	14	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	c0003	465	78	1	10	60	3	4	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	c0004	480	16	14	2	0	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	c0005	480	7	7	0	0	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	c0006	480	4	0	0	4	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	c0007	480	3	0	0	3	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	c0008	480	3	3	0	0	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	c0009	480	2	0	0	2	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	c0010	480	2	0	0	1	0	1	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	c0011	480	2	0	0	2	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	c0012	480	1	0	0	0	0	1	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-9_chr17_41250384_41261364	0/1	c0001	525	265	46	53	132	10	23	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	c0002	510	124	28	15	61	5	15	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	c0003	510	12	11	1	0	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	c0004	510	5	4	1	0	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	c0005	525	2	0	0	0	0	2	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	c0006	510	2	2	0	0	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	c0007	525	1	0	0	0	1	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	c0008	510	1	0	0	1	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	c0009	510	1	1	0	0	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	c0010	510	1	1	0	0	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	c0011	510	1	1	0	0	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTCAP2_chr1_155164408_155178304	1/1	c0001	411	327	91	60	112	16	46	copy fasta	KRTCAP2	chr1	155164408	155178304
KRTCAP2_chr1_155164408_155178304	0/0	c0002	411	3	3	0	0	0	0	copy fasta	KRTCAP2	chr1	155164408	155178304
KRTCAP3_chr2_27437381_27449297	1/1	c0001	723	278	76	64	87	12	37	copy fasta	KRTCAP3	chr2	27437381	27449297
KRTCAP3_chr2_27437381_27449297	0/0	c0002	723	3	3	0	0	0	0	copy fasta	KRTCAP3	chr2	27437381	27449297
KRTCAP3_chr2_27437381_27449297	0/0	c0003	723	2	2	0	0	0	0	copy fasta	KRTCAP3	chr2	27437381	27449297
KRTCAP3_chr2_27437381_27449297	0/0	c0004	723	1	0	0	0	0	1	copy fasta	KRTCAP3	chr2	27437381	27449297
KRTCAP3_chr2_27437381_27449297	0/0	c0005	723	1	0	0	1	0	0	copy fasta	KRTCAP3	chr2	27437381	27449297
KRTCAP3_chr2_27437381_27449297	0/0	c0006	723	1	1	0	0	0	0	copy fasta	KRTCAP3	chr2	27437381	27449297
KRTDAP_chr19_35482324_35495464	1/1	c0001	300	424	95	75	198	14	40	copy fasta	KRTDAP	chr19	35482324	35495464