JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRTDAP_chr19_35482324_35495464	0/0	c0002	300	5	0	3	0	0	2	copy fasta	KRTDAP	chr19	35482324	35495464
KRTDAP_chr19_35482324_35495464	0/0	c0003	300	1	1	0	0	0	0	copy fasta	KRTDAP	chr19	35482324	35495464
KSR1_chr17_27451448_27631435	0/0	c0001	2787	89	34	18	19	5	13	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0002	2787	50	6	11	24	4	5	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0003	2787	26	1	11	14	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0004	2787	25	11	4	0	3	7	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0005	2787	16	14	2	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/1	c0006	2787	13	2	9	0	0	1	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	1/0	c0007	2787	6	2	2	0	1	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0008	2787	5	5	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0009	2787	4	1	2	0	1	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0010	2787	2	2	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0011	2787	2	0	1	0	0	1	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0012	2787	1	0	1	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0013	2787	1	1	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0014	2787	1	0	0	1	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0015	2787	1	0	1	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0016	2787	1	1	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0017	2787	1	0	0	1	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0018	2787	1	0	0	0	0	1	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	c0019	2787	1	0	0	1	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR2_chr12_117448012_117973990	0/0	c0001	2853	79	39	13	22	1	4	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0002	2853	49	7	15	22	0	5	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0003	2853	30	21	4	3	1	1	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/1	c0004	2853	9	1	3	2	1	1	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	1/0	c0005	2853	6	1	2	0	1	1	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0006	2853	4	4	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0007	2853	3	0	0	3	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0008	2853	3	3	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0009	2853	2	2	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0010	2853	2	0	0	0	0	2	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0011	2853	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0012	2853	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0013	2853	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0014	2853	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0015	2853	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0016	2853	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0017	2853	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0018	2853	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	c0019	2853	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KTI12_chr1_52027103_52038810	1/0	c0001	1065	222	57	39	93	9	23	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/1	c0002	1065	38	5	3	28	0	1	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	c0003	1065	36	23	2	8	0	3	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	c0004	1038	11	2	1	2	1	5	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	c0005	1065	2	2	0	0	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	c0006	1065	2	2	0	0	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	c0007	1065	1	0	0	1	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	c0008	1065	1	0	1	0	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	c0009	1065	1	0	0	1	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	c0010	1065	1	0	0	1	0	0	copy fasta	KTI12	chr1	52027103	52038810