JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KTI12_chr1_52027103_52038810	0/0	c0011	1065	1	1	0	0	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	c0012	1065	1	0	0	0	0	1	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	c0013	1065	1	0	0	0	0	1	copy fasta	KTI12	chr1	52027103	52038810
KTN1_chr14_55575207_55689579	1/1	c0001	4074	273	49	53	132	9	28	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0002	4074	13	2	8	1	1	1	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0003	4074	5	3	0	0	0	2	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0004	4074	3	3	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0005	4074	2	0	0	2	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0006	4074	2	0	0	2	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0007	4074	2	0	0	0	0	2	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0008	4074	2	2	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0009	4074	2	2	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0010	4074	1	0	1	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0011	4074	1	1	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0012	4074	1	0	0	1	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0013	4074	1	1	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0014	4074	1	1	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0015	4074	1	1	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0016	4074	1	1	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0017	4074	1	0	0	0	0	1	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0018	4074	1	0	1	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	c0019	4074	1	0	1	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KXD1_chr19_18552870_18574378	1/0	c0001	531	170	39	32	74	4	20	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/1	c0002	531	168	6	40	95	8	18	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	c0003	531	40	34	2	0	2	2	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	c0004	531	5	5	0	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	c0005	531	4	3	1	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	c0006	531	3	3	0	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	c0007	531	2	2	0	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	c0008	531	2	2	0	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	c0009	531	1	0	1	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	c0010	531	1	0	0	1	0	0	copy fasta	KXD1	chr19	18552870	18574378
KYAT1_chr9_128827942_128886950	1/1	c0001	1269	319	75	63	133	8	38	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	c0002	1269	2	0	0	2	0	0	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	c0003	1269	1	0	0	0	0	1	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	c0004	1269	1	0	0	0	0	1	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	c0005	1269	1	1	0	0	0	0	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	c0006	1269	1	0	0	1	0	0	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	c0007	1269	1	0	1	0	0	0	copy fasta	KYAT1	chr9	128827942	128886950
KYAT3_chr1_88930779_88997629	1/1	c0001	1365	162	50	29	57	11	13	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	c0002	1365	111	11	29	59	7	5	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	c0003	1365	13	12	1	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	c0004	1365	5	5	0	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	c0005	1365	4	4	0	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	c0006	1365	4	4	0	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	c0007	1365	2	2	0	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	c0008	1365	2	0	0	2	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	c0009	1365	2	0	2	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	c0010	1365	2	0	0	2	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	c0011	1365	1	1	0	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629