JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KYAT3_chr1_88930779_88997629	0/0	c0012	1365	1	0	1	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	c0013	1365	1	0	0	1	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	c0014	1365	1	0	0	1	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	c0015	1365	1	1	0	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYNU_chr2_142872664_143060833	1/1	c0001	1398	255	68	46	105	7	27	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	c0002	1398	69	9	8	41	5	6	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	c0003	1398	4	4	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	c0004	1398	1	0	0	0	0	1	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	c0005	1398	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	c0006	1398	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	c0007	1398	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KY_chr3_134594923_134656022	0/1	c0001	1986	145	27	36	49	10	22	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	c0002	1986	61	21	8	18	1	13	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	c0003	1986	29	7	7	7	2	6	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	c0004	1986	18	16	2	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	c0005	1986	14	6	1	7	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	c0006	1986	12	3	5	0	1	3	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	c0007	1986	3	2	1	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	c0008	1986	3	0	0	3	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	1/0	c0009	1986	2	1	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	c0010	1986	2	0	0	2	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	c0011	1986	1	1	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	c0012	1986	1	1	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	c0013	1986	1	0	0	1	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	c0014	1986	1	1	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	c0015	1986	1	0	0	1	0	0	copy fasta	KY	chr3	134594923	134656022
L1CAM_chrX_153856516_153891173	1/1	c0001	3774	237	57	47	95	9	27	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0002	3774	7	7	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0003	3774	6	0	0	6	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0004	3774	5	5	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0005	3774	2	2	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0006	3774	2	0	0	2	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0007	3774	2	1	1	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0008	3774	2	2	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0009	3775	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0010	3778	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0011	3778	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0012	3774	1	1	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0013	3774	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0014	3774	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0015	3774	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0016	3774	1	0	0	0	0	1	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0017	3775	1	0	1	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0018	3784	1	0	0	0	0	1	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0019	3774	1	0	0	0	0	1	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0020	3774	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0021	3774	1	0	0	0	0	1	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0022	3774	1	0	0	0	0	1	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0023	3773	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0024	3776	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173