JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
L1CAM_chrX_153856516_153891173	0/0	c0025	3775	1	0	1	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0026	3776	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0027	3776	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	c0028	3774	1	1	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1TD1_chr1_62189849_62217328	0/0	c0001	2598	140	16	21	97	3	3	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0002	2598	57	18	8	19	1	11	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0003	2598	51	7	15	16	2	11	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	1/0	c0004	2598	51	0	6	30	4	10	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0005	2598	24	9	12	0	1	2	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/1	c0006	2598	11	1	9	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0007	2598	10	0	0	10	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0008	2598	10	10	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0009	2604	7	6	1	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0010	2598	7	5	2	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0011	2568	6	0	1	0	3	2	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0012	2568	6	5	1	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0013	2598	6	5	1	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0014	2598	6	4	2	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0015	2598	3	2	1	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0016	2598	3	1	0	1	1	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0017	2598	2	2	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0018	2604	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0019	2574	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0020	2604	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0021	2568	1	0	0	0	0	1	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0022	2598	1	0	0	0	1	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0023	2598	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0024	2598	1	0	0	0	0	1	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0025	2598	1	0	0	1	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0026	2598	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0027	2598	1	0	0	0	0	1	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0028	2598	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0029	2568	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0030	2598	1	0	0	1	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	c0031	2598	1	0	0	1	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L2HGDH_chr14_50237434_50317229	0/1	c0001	1392	202	55	36	86	5	19	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	1/0	c0002	1392	128	25	27	48	7	20	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	c0003	1392	16	6	3	5	0	2	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	c0004	1392	5	1	4	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	c0005	1392	4	4	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	c0006	1392	2	2	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	c0007	1392	1	0	0	1	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	c0008	1392	1	0	0	0	0	1	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	c0009	1392	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L3HYPDH_chr14_59467606_59489408	1/0	c0001	1065	150	14	37	78	3	17	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/1	c0002	1065	86	3	21	42	2	17	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	c0003	1065	59	39	8	2	5	5	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	c0004	1065	16	13	3	0	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	c0005	1065	13	13	0	0	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	c0006	1065	11	2	4	3	2	0	copy fasta	L3HYPDH	chr14	59467606	59489408