JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
L3HYPDH_chr14_59467606_59489408	0/0	c0007	1065	7	1	5	0	1	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	c0008	1065	6	6	0	0	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	c0009	1065	1	0	0	0	1	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	c0010	1065	1	0	0	1	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	c0011	1065	1	0	0	1	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	c0012	1043	1	1	0	0	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	c0013	1065	1	0	0	1	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	c0014	1065	1	0	0	0	0	1	copy fasta	L3HYPDH	chr14	59467606	59489408
L3MBTL1_chr20_43502697_43546895	1/1	c0001	2589	378	84	66	172	14	40	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0002	2589	20	0	0	14	0	6	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0003	2589	8	0	1	7	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0004	2589	3	3	0	0	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0005	2589	2	1	1	0	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0006	2589	1	0	0	1	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0007	2589	1	0	0	1	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0008	2589	1	1	0	0	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0009	2589	1	0	0	0	0	1	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0010	2579	1	0	0	1	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0011	2589	1	0	0	1	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0012	2589	1	1	0	0	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0013	2589	1	1	0	0	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0014	2589	1	0	0	0	0	1	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0015	2589	1	1	0	0	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	c0016	2589	1	0	0	1	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL2_chr22_41200312_41236271	1/0	c0001	2118	148	22	11	96	3	15	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0002	2118	120	40	21	40	7	12	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/1	c0003	2118	61	11	24	8	3	14	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0004	2118	11	0	0	11	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0005	2118	10	0	7	3	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0006	2118	6	6	0	0	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0007	2118	3	3	0	0	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0008	2118	2	0	0	2	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0009	2118	2	2	0	0	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0010	2118	1	0	0	1	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0011	2118	1	0	0	0	0	1	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0012	2118	1	1	0	0	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0013	2118	1	1	0	0	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0014	2118	1	0	0	0	1	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0015	2118	1	0	0	1	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	c0016	2094	1	0	1	0	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL3_chr6_130013581_130146438	0/1	c0001	2343	126	13	26	66	6	14	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	1/0	c0002	2343	106	44	20	25	4	12	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	c0003	2343	52	29	2	20	0	1	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	c0004	2343	5	4	1	0	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	c0005	2343	3	0	0	3	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	c0006	2343	2	0	1	0	0	1	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	c0007	2343	1	0	0	1	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	c0008	2343	1	0	0	1	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	c0009	2343	1	0	0	1	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	c0010	2343	1	0	0	1	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438