JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANGPT2_chr8_6494632_6568245	0/0	c0001	1488	83	8	18	47	1	9	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	1/0	c0002	1488	51	16	12	10	5	7	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0003	1488	43	5	5	30	2	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0004	1488	28	9	0	19	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/1	c0005	1488	26	1	12	2	3	7	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0006	1488	22	7	3	7	1	4	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0007	1488	14	10	0	1	1	2	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0008	1488	11	1	0	8	0	2	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0009	1488	7	4	0	1	0	2	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0010	1488	7	4	0	3	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0011	1488	5	1	1	0	0	3	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0012	1488	4	4	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0013	1488	4	2	2	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0014	1488	4	3	1	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0015	1488	3	0	0	2	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0016	1488	2	2	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0017	1488	2	2	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0018	1488	2	0	0	2	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0019	1488	2	0	0	2	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0020	1488	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0021	1488	1	0	1	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0022	1488	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0023	1488	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0024	1488	1	0	0	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0025	1488	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0026	1488	1	0	0	0	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0027	1488	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0028	1488	1	0	0	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0029	1488	1	0	0	0	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0030	1488	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0031	1488	1	0	0	0	1	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0032	1488	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0033	1488	1	0	1	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0034	1488	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	c0035	1488	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT4_chr20_864900_921334	0/0	c0001	1512	179	17	27	112	3	20	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	1/1	c0002	1512	138	22	35	52	7	20	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0003	1512	54	13	5	29	0	7	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0004	1512	9	5	3	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0005	1512	9	7	2	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0006	1512	5	4	1	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0007	1512	3	3	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0008	1512	3	3	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0009	1512	3	3	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0010	1512	3	3	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0011	1512	3	3	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0012	1512	2	2	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0013	1512	2	2	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0014	1512	2	2	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	c0015	1512	2	0	2	0	0	0	copy fasta	ANGPT4	chr20	864900	921334