JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
L3MBTL4_chr18_5949717_6419911	1/1	c0001	1845	51	24	12	7	0	6	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	c0002	1845	29	17	4	4	0	4	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	c0003	1845	4	4	0	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	c0004	1845	2	2	0	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	c0005	1845	2	2	0	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	c0006	1845	2	2	0	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	c0007	1845	1	1	0	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	c0008	1845	1	1	0	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	c0009	1845	1	0	0	1	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	c0010	1845	1	1	0	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
LACC1_chr13_43874904_43898932	1/0	c0001	1293	257	51	39	135	8	23	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/1	c0002	1293	154	27	27	75	2	22	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	c0003	1293	23	0	4	18	1	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	c0004	1293	21	13	4	0	1	3	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	c0005	1293	1	1	0	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACRT_chr12_54625811_54639895	1/1	c0001	417	405	87	76	180	18	42	copy fasta	LACRT	chr12	54625811	54639895
LACRT_chr12_54625811_54639895	0/0	c0002	417	9	9	0	0	0	0	copy fasta	LACRT	chr12	54625811	54639895
LACTB2_chr8_70632266_70674185	1/0	c0001	867	292	49	50	149	11	32	copy fasta	LACTB2	chr8	70632266	70674185
LACTB2_chr8_70632266_70674185	0/0	c0002	867	57	39	12	1	1	4	copy fasta	LACTB2	chr8	70632266	70674185
LACTB2_chr8_70632266_70674185	0/1	c0003	867	1	0	0	0	0	0	copy fasta	LACTB2	chr8	70632266	70674185
LACTB2_chr8_70632266_70674185	0/0	c0004	867	1	0	0	1	0	0	copy fasta	LACTB2	chr8	70632266	70674185
LACTB2_chr8_70632266_70674185	0/0	c0005	867	1	0	0	1	0	0	copy fasta	LACTB2	chr8	70632266	70674185
LACTBL1_chr1_22948043_22977866	1/1	c0001	1740	241	58	41	104	10	26	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0002	1740	121	2	15	88	5	11	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0003	1740	24	0	10	9	0	5	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0004	1740	14	9	5	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0005	1740	8	7	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0006	1740	6	5	1	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0007	1740	3	1	0	2	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0008	1737	3	3	0	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0009	1740	3	2	1	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0010	1740	3	0	0	3	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0011	1740	2	0	2	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0012	1740	2	0	0	0	1	1	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0013	1740	2	0	2	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0014	1740	2	0	2	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0015	1740	2	0	0	0	2	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0016	1740	1	1	0	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0017	1740	1	1	0	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0018	1740	1	1	0	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0019	1740	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0020	1740	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0021	1740	1	1	0	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0022	1740	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0023	1740	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0024	1740	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0025	1740	1	1	0	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0026	1740	1	0	1	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0027	1740	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	c0028	1740	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866