JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LACTBL1_chr1_22948043_22977866	0/0	c0029	1740	1	0	0	0	0	1	copy fasta	LACTBL1	chr1	22948043	22977866
LACTB_chr15_63116861_63147061	0/0	c0001	1644	241	50	31	129	6	25	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0002	1644	71	10	8	47	1	5	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	1/0	c0003	1644	53	21	15	0	4	12	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0004	1644	16	4	11	0	1	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0005	1644	7	7	0	0	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0006	1644	7	0	4	0	3	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0007	1644	5	0	2	0	0	3	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0008	1644	3	0	0	3	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0009	1644	2	1	1	0	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0010	1644	1	1	0	0	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0011	1644	1	1	0	0	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0012	1644	1	1	0	0	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0013	1644	1	1	0	0	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0014	1644	1	0	1	0	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0015	1644	1	0	0	0	1	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0016	1644	1	0	0	0	0	1	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0017	1644	1	0	1	0	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0018	1644	1	0	0	1	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	c0019	1644	1	1	0	0	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/1	c0020	1644	1	0	0	0	0	0	copy fasta	LACTB	chr15	63116861	63147061
LAD1_chr1_201375833_201404324	1/0	c0001	1554	160	15	34	85	5	20	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0002	1554	120	15	17	75	3	10	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0003	1551	33	15	0	13	3	2	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0004	1554	30	19	3	7	0	1	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0005	1554	24	11	7	0	1	5	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/1	c0006	1551	23	1	2	15	1	3	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0007	1554	9	8	1	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0008	1554	4	0	0	4	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0009	1554	4	4	0	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0010	1554	4	1	1	1	1	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0011	1551	3	3	0	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0012	1554	2	1	1	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0013	1554	2	0	0	2	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0014	1551	2	0	0	0	0	2	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0015	1554	1	0	1	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0016	1554	1	1	0	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0017	1554	1	0	0	1	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0018	1554	1	0	1	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0019	1554	1	0	0	1	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0020	1554	1	0	0	1	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0021	1551	1	0	0	0	0	1	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0022	1554	1	0	1	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0023	1554	1	0	1	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0024	1554	1	1	0	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0025	1551	1	0	0	1	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	c0026	1551	1	1	0	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAG3_chr12_6767520_6783455	0/0	c0001	1578	337	56	56	173	12	40	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	1/1	c0002	1578	118	30	30	41	5	10	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	c0003	1584	5	5	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455