JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAG3_chr12_6767520_6783455	0/0	c0004	1578	2	2	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	c0005	1578	1	1	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	c0006	1578	1	0	0	1	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	c0007	1578	1	0	0	1	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	c0008	1578	1	1	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	c0009	1578	1	1	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	c0010	1578	1	0	0	0	1	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	c0011	1578	1	1	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	c0012	1578	1	0	0	1	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	c0013	1603	1	0	0	1	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	c0014	1578	1	1	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAGE3_chrX_154472775_154484281	1/1	c0001	432	269	72	51	101	11	32	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	c0002	432	7	0	0	6	0	1	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	c0003	432	4	0	0	4	0	0	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	c0004	432	2	0	0	2	0	0	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	c0005	432	1	1	0	0	0	0	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	c0006	432	1	0	0	1	0	0	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	c0007	432	1	0	0	0	0	1	copy fasta	LAGE3	chrX	154472775	154484281
LAIR1_chr19_54346384_54369931	0/1	c0001	864	298	62	52	144	12	27	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0002	864	81	10	14	48	1	8	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0003	864	27	3	14	3	0	7	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	1/0	c0004	864	13	0	0	11	0	1	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0005	864	6	5	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0006	864	5	3	0	0	2	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0007	864	4	4	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0008	864	4	3	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0009	864	3	3	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0010	864	3	0	2	0	1	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0011	864	2	0	0	2	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0012	864	2	0	0	2	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0013	864	2	2	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0014	864	2	0	0	0	0	2	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0015	864	2	0	0	2	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0016	70	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0017	864	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0018	864	1	0	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0019	864	1	0	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0020	864	1	0	0	0	0	1	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0021	864	1	0	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0022	864	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	c0023	864	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR2_chr19_54497831_54515687	0/1	c0001	459	403	53	72	223	15	39	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	c0002	459	28	18	6	1	1	2	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	c0003	459	19	18	1	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	c0004	459	11	0	6	2	0	3	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	c0005	459	4	4	0	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	c0006	459	4	4	0	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	c0007	459	3	0	1	0	0	2	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	c0008	459	1	1	0	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	c0009	459	1	0	0	1	0	0	copy fasta	LAIR2	chr19	54497831	54515687