JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
LAMA1_chr18_6936742_7122797	0/0	c0097	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0098	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0099	9228	1	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0100	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0101	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0102	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0103	9228	1	0	0	0	1	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0104	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0105	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0106	9228	1	0	0	0	1	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	1/0	c0107	9228	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0108	9228	1	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0109	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0110	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0111	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0112	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0113	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0114	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0115	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0116	9228	1	0	0	0	1	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0117	9228	1	0	0	0	1	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0118	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0119	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0120	9228	1	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0121	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0122	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0123	9228	1	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0124	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0125	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0126	9228	1	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0127	9228	1	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0128	9228	1	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0129	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0130	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0131	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0132	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0133	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0134	9228	1	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0135	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0136	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0137	9228	1	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0138	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0139	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0140	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0141	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0142	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0143	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0144	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0145	9228	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0146	9228	1	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797