JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMA1_chr18_6936742_7122797	0/0	c0197	9228	1	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0198	9228	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0199	9228	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0200	9228	1	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0201	9228	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0202	9228	1	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0203	9228	1	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0204	9228	1	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0205	9228	1	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0206	9228	1	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0207	9228	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0208	9228	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0209	9228	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0210	9228	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0211	9228	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0212	9228	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	c0213	9228	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA2_chr6_128878138_129521566	0/1	c0001	9369	5	0	2	1	1	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0002	9369	3	3	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0003	9369	3	3	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0004	9369	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0005	9369	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0006	9369	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0007	9369	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0008	9369	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0009	9369	2	1	0	1	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0010	9369	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0011	9369	2	0	0	1	0	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0012	9369	2	0	2	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0013	9369	1	0	0	0	0	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0014	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0015	9369	1	0	0	0	1	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0016	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0017	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0018	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0019	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0020	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0021	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0022	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0023	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0024	9369	1	0	0	1	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0025	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0026	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0027	9369	1	0	0	0	1	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0028	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0029	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0030	9369	1	0	0	0	0	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0031	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0032	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0033	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566