JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LAMA2_chr6_128878138_129521566	0/0	c0034	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0035	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0036	9369	1	0	1	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0037	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0038	9369	1	0	0	0	1	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0039	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0040	9369	1	0	0	0	0	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0041	9369	1	0	0	0	1	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0042	9369	1	0	0	0	0	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0043	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0044	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0045	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0046	9369	1	0	0	1	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0047	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0048	9369	1	0	0	0	1	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0049	9369	1	0	0	1	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0050	9369	1	0	0	1	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0051	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0052	9369	1	0	0	0	0	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0053	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0054	9369	1	0	0	1	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0055	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0056	9369	1	0	1	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0057	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0058	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0059	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0060	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0061	9369	1	0	0	0	0	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	1/0	c0062	9369	1	0	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0063	9369	1	0	0	1	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0064	9369	1	0	0	1	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0065	9369	1	0	0	1	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0066	9369	1	0	0	1	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0067	9369	1	0	0	1	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0068	9369	1	0	0	1	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0069	9369	1	0	0	0	0	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0070	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	c0071	9369	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA3_chr18_23684453_23960066	0/0	c0001	10002	55	7	13	18	5	12	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0002	10002	52	15	1	30	0	6	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0003	10002	42	2	10	23	3	4	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0004	10002	21	2	8	8	1	2	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0005	10002	12	11	0	0	0	1	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0006	10002	9	0	3	6	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0007	10002	8	0	0	1	3	4	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0008	10002	7	7	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0009	10002	6	6	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0010	10002	4	0	1	0	0	3	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0011	10002	4	4	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	c0012	10002	2	0	1	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066